Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4 132 8e-26 >seq4 Length=23952536 Score = 132 bits (146), Expect = 8e-26 Identities = 522/810 (64%), Gaps = 26/810 (3%) Strand=Plus/Plus Query 159644 ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAAT 159703 || || |||||||| ||||| |||||||| |||| || || ||||| || |||| Sbjct 3358177 ACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATCATCTCCATAAAGGTGAAT 3358236 Query 159704 GGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACA 159763 || |||||| | ||| || || ||||| || ||| || | || || ||| Sbjct 3358237 GGATTCTTCGTATTGTAGATTTTGCCAACACCGAGTTCCACCAACAGACGATCCGCAACA 3358296 Query 159764 AATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCT 159823 ||||| || || ||||| |||| || || || | || | ||||| || || Sbjct 3358297 AATTCAATATACTCGGACATCAATGCACAATTCATGCCAATCAATTTGACGGGCAGAGCA 3358356 Query 159824 TCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCG 159883 || | |||||||| | |||||| || || || | | |||| || || || Sbjct 3358357 TCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCAGAGATGATCTCAATGATGCGCTCA 3358416 Query 159884 TACCCCGGC--TTGCCCAAAATGTGGTCCTTAAACAGGAGGCAC-GCAAAGTCGCAGTGC 159940 | || |||| | ||||| | |||| | ||| |||||||| || ||| Sbjct 3358417 CGGCTAGGACGTTGCACCAAATGCCGG-----AACATCAT-CACAGCAAAGTCACAATGC 3358470 Query 159941 AGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGC 160000 | |||||||| || ||||| ||||| ||||| | | | || || ||||| | ||||| Sbjct 3358471 AAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCGGGCATCAGACCACGT 3358530 Query 160001 GGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCA 160060 || |||||||| || | ||||| || ||||| ||||| ||||||||||| || Sbjct 3358531 TTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCCTCCACGGCAGCG 3358590 Query 160061 AACGCCACGAGCCTCTCACCAAA---AGAGGCGTTGGTGTCATG-GGTCCACCTTTTGGC 160116 ||||| | || ||||| ||||| | || || | ||| |||| || Sbjct 3358591 AACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTCG----ATGAAATCCAAGAGAGCGC 3358646 Query 160117 CCATTCAGCCTTCTTTGC--GATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCC 160174 ||| || |||| || || || ||||| || | ||| || |||| ||| Sbjct 3358647 CCAATCGGCCT--TTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACAGATAATCC 3358704 Query 160175 TGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACA 160234 | |||| |||| | || ||| | |||||| |||||| || | ||||||| Sbjct 3358705 CGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTACATCTCCGAGTGCACA 3358764 Query 160235 TTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATA-CTGCACCTCCTG 160293 || || ||||| || |||||| |||||| | | || | | || ||||||||||| Sbjct 3358765 TTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAG-CTTCGGTTATTTGCACCTCCTG 3358823 Query 160294 TGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAA 160353 |||| | | | ||||| ||||||| | || |||| ||| |||||||| || | Sbjct 3358824 GCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAGGCGGCAAAGAAGGCGAG 3358883 Query 160354 CACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTC 160413 ||| || ||||| || || | ||||| | | | | | |||||| |||| ||| Sbjct 3358884 CACATGGGAGATAAAGTGACGCTCGTTATCAGTTAAAC---GTGCCCAGTCGGTCAAGTC 3358940 Query 160414 TTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 || | | ||| ||||||||| | |||| Sbjct 3358941 TTTAGAGAGATCCACCTCTTCCACAGTCCA 3358970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795123612459680