Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq3 143 6e-29
seq2 140 8e-28
seq6 127 5e-24
>seq3
Length=22052390
Score = 143 bits (158), Expect = 6e-29
Identities = 163/218 (75%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| || || || ||||||||||| |||| |||||||||| ||| || | ||||||
Sbjct 1975156 AGGACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAGGTGCGGCCATCT 1975097
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||| ||||| ||||||||||| ||||||||||| || || |||||| || ||
Sbjct 1975096 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATTCCCTCCTTATCT 1975037
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| ||| || | ||| || | | || || ||||| ||||| |||
Sbjct 1975036 TGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAGGTGATGGTC 1974977
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
|| ||||| | |||||| || || || || ||||||
Sbjct 1974976 TTTCCCGTCAAAGTTTTAACGAAGATCTG---CATTTT 1974942
Score = 98.7 bits (108), Expect = 2e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || | || || || ||||||||||| | |||||| || | || ||
Sbjct 1975453 CGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAGGGTG 1975394
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||||||||| ||||| ||||||||||| ||||||||||| || || ||| |||
Sbjct 1975393 CGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCT 1975334
Query 199529 TCTCGCTCCTGAATCTT 199545
|| |||||||||||
Sbjct 1975333 TCCTTGTCCTGAATCTT 1975317
>seq2
Length=27840087
Score = 140 bits (154), Expect = 8e-28
Identities = 162/218 (74%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| | ||| |||||||| || | ||||||||| | || ||| | ||||||
Sbjct 185582 AGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 185523
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| ||||||||||| ||||||||||| || || ||||| ||| ||
Sbjct 185522 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCT 185463
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| |||||| | | || || ||||| || || |||
Sbjct 185462 TGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAAGTAATGGTC 185403
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
|| || ||||||||||| || || ||||| ||||||
Sbjct 185402 TTGCCGGTGAGAGTTTTAACGAAGATTTG---CATTTT 185368
Score = 127 bits (140), Expect = 5e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | ||| | || ||||| ||||||| ||||||||| | | |||
Sbjct 14207452 CGAAGGCGGAGCACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTG 14207511
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||| ||||| || || ||||| ||||||||||| || ||| |||||||
Sbjct 14207512 CGACCATCTTCCAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCT 14207571
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
||| ||||| ||||| || || |||| ||| || | | ||| || || |
Sbjct 14207572 TCTTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAGA 14207631
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||||||||| || ||||| ||||| || ||
Sbjct 14207632 GTGATGGTCTTACCCGTTAGGGTTTTAACAAAGATCTG 14207669
>seq6
Length=26536676
Score = 127 bits (140), Expect = 5e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| || || || ||||||||||| |||| ||| ||||| | || ||| | ||||||
Sbjct 9462237 AGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTRTAGTCGGACAGAGTGCGTCCATCC 9462296
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || |||||||| ||||||||||| || || ||| || || ||
Sbjct 9462297 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCT 9462356
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || ||| | |||||| | | || || ||||| ||||| |||
Sbjct 9462357 TGGATCTTGGCCTTAACATTTTCAATGGTGTCCGAGGGCTCAACCTCCAAAGTGATGGTC 9462416
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | ||| || || || || ||
Sbjct 9462417 TTGCCAGTCAAAGTCTTGACGAAGATCTG 9462445
Score = 111 bits (122), Expect = 4e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| | ||| |||||||| |||| ||||||||| | || ||| | ||||||
Sbjct 9462009 AGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCC 9462068
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || |||||||| ||||||||||| || || ||| || || ||
Sbjct 9462069 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCT 9462128
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || || | |||||| | | || || ||||| ||||| ||
Sbjct 9462129 TGGATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTT 9462188
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | ||| || || || || ||
Sbjct 9462189 TTGCCAGTCAAAGTCTTGACGAAGATCTG 9462217
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178873596522926
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |