Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq6 138 1e-27 seq2 136 4e-27 seq3 118 1e-21 >seq6 Length=26536676 Score = 138 bits (152), Expect = 1e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| ||||| || | || ||| | ||||| ||||| ||| |||||| ||||| ||||| Sbjct 9461987 TTAATTGCCACCACGTAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTA 9462046 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||| |||||||| | || || ||||||||||| ||||| |||| |||||||| || Sbjct 9462047 GTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATC 9462106 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | || | | ||||||||| |||||| ||| | || | | ||||| | Sbjct 9462107 TGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGG 9462166 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||| |||||||||||||| |||| || || || ||||| ||||| Sbjct 9462167 CTCGACCTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 9462220 Score = 109 bits (120), Expect = 6e-19 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | || |||||| ||||| || |||||||| |||||||| | || || Sbjct 9462240 ACCAGATGAAGGGTCGACTCCTTCTGGATGTTRTAGTCGGACAGAGTGCGTCCATCCTCC 9462299 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| |||| |||||||| || | || | | ||||||||| | Sbjct 9462300 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGG 9462359 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | | | | ||||| | || || |||| |||||||| ||| Sbjct 9462360 ATCTTGGCCTTAACATTTTCAATGGTGTCCGAGGGCTCAACCTCCAAAGTGATGGTCTTG 9462419 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || |||| || || || ||||| ||||| || Sbjct 9462420 CCAGTCAAAGTCTTGACGAAGATCTGCATATT 9462451 >seq2 Length=27840087 Score = 136 bits (150), Expect = 4e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||| | ||||| ||||| || |||||| || || |||||||||| Sbjct 185599 TGCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGG 185540 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || ||||||||||||||||| |||| |||||||| || | | Sbjct 185539 ACAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTG 185480 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||| ||||| |||||| ||||| || | | ||||| | || | Sbjct 185479 GGATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGA 185420 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | |||| || ||||| ||||| || || |||||||| ||||||||||||||| Sbjct 185419 CCTCCAAAGTAATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCATTTTG 185367 Score = 116 bits (128), Expect = 4e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| ||||| || ||| |||||||| ||||||||||| |||||||| | || || Sbjct 14207463 CACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTC 14207522 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | |||||||| || || || | |||||||| || | || | | || |||||| Sbjct 14207523 CAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 14207582 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| |||| || | | || || || ||| || || | |||||||| || Sbjct 14207583 GATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 14207642 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCAC 46600 ||||| || |||||||||||||| |||||| ||||| Sbjct 14207643 ACCCGTTAGGGTTTTAACAAAGATCTGCATTGTGCAC 14207679 >seq3 Length=22052390 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | || |||||| |||||||||||||| || | ||||| | || || Sbjct 1975153 ACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAGGTGCGGCCATCTTCC 1975094 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || |||||||||||||| |||| |||||||| || | || | | |||||| || Sbjct 1975093 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATTCCCTCCTTATCTTGA 1975034 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| || | | || ||| | || || |||| |||||||| || Sbjct 1975033 ATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAGGTGATGGTCTTT 1974974 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||||||| |||||||| ||||| ||||||||| Sbjct 1974973 CCCGTCAAAGTTTTAACGAAGATCTGCATTTTG 1974941 Score = 86.0 bits (94), Expect = 7e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||| ||| | ||| ||||||||| || ||||| ||||| || ||||| | Sbjct 1975448 ACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAGGGTGCGACC 1975389 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || || |||||||||||||| |||| |||||||| || | || | | ||||| Sbjct 1975388 ATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTT 1975329 Query 46498 GTCCATGATCTT 46509 |||| ||||| Sbjct 1975328 GTCCTGAATCTT 1975317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565215945904560