Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq6 138 1e-27
seq2 136 4e-27
seq3 118 1e-21
>seq6
Length=26536676
Score = 138 bits (152), Expect = 1e-27
Identities = 171/234 (73%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419
||| ||||| || | || ||| | ||||| ||||| ||| |||||| ||||| |||||
Sbjct 9461987 TTAATTGCCACCACGTAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTA 9462046
Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479
|||||| |||||||| | || || ||||||||||| ||||| |||| |||||||| ||
Sbjct 9462047 GTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATC 9462106
Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539
| || | | ||||||||| |||||| ||| | || | | ||||| |
Sbjct 9462107 TGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGG 9462166
Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || |||| |||||||||||||| |||| || || || ||||| |||||
Sbjct 9462167 CTCGACCTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 9462220
Score = 109 bits (120), Expect = 6e-19
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||||||| | || |||||| ||||| || |||||||| |||||||| | || ||
Sbjct 9462240 ACCAGATGAAGGGTCGACTCCTTCTGGATGTTRTAGTCGGACAGAGTGCGTCCATCCTCC 9462299
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||| ||||| |||| |||||||| || | || | | ||||||||| |
Sbjct 9462300 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGG 9462359
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| ||| | | | | ||||| | || || |||| |||||||| |||
Sbjct 9462360 ATCTTGGCCTTAACATTTTCAATGGTGTCCGAGGGCTCAACCTCCAAAGTGATGGTCTTG 9462419
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596
|| |||| || || || ||||| ||||| ||
Sbjct 9462420 CCAGTCAAAGTCTTGACGAAGATCTGCATATT 9462451
>seq2
Length=27840087
Score = 136 bits (150), Expect = 4e-27
Identities = 170/233 (73%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || | | ||| | ||||| ||||| || |||||| || || ||||||||||
Sbjct 185599 TGCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGG 185540
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| |||||||| | || || ||||||||||||||||| |||| |||||||| || | |
Sbjct 185539 ACAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTG 185480
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | | ||| ||||| |||||| ||||| || | | ||||| | || |
Sbjct 185479 GGATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGA 185420
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
| |||| || ||||| ||||| || || |||||||| |||||||||||||||
Sbjct 185419 CCTCCAAAGTAATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCATTTTG 185367
Score = 116 bits (128), Expect = 4e-21
Identities = 156/217 (72%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||| ||||| || ||| |||||||| ||||||||||| |||||||| | || ||
Sbjct 14207463 CACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTC 14207522
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
| |||||||| || || || | |||||||| || | || | | || ||||||
Sbjct 14207523 CAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 14207582
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
|||||| |||| || | | || || || ||| || || | |||||||| ||
Sbjct 14207583 GATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 14207642
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCAC 46600
||||| || |||||||||||||| |||||| |||||
Sbjct 14207643 ACCCGTTAGGGTTTTAACAAAGATCTGCATTGTGCAC 14207679
>seq3
Length=22052390
Score = 118 bits (130), Expect = 1e-21
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||||||| | || |||||| |||||||||||||| || | ||||| | || ||
Sbjct 1975153 ACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAGGTGCGGCCATCTTCC 1975094
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|| |||||||||||||| |||| |||||||| || | || | | |||||| ||
Sbjct 1975093 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATTCCCTCCTTATCTTGA 1975034
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| ||||| || | | || ||| | || || |||| |||||||| ||
Sbjct 1975033 ATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAGGTGATGGTCTTT 1974974
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
||||||| |||||||| ||||| |||||||||
Sbjct 1974973 CCCGTCAAAGTTTTAACGAAGATCTGCATTTTG 1974941
Score = 86.0 bits (94), Expect = 7e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| |||| ||| | ||| ||||||||| || ||||| ||||| || ||||| |
Sbjct 1975448 ACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAGGGTGCGACC 1975389
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || || |||||||||||||| |||| |||||||| || | || | | |||||
Sbjct 1975388 ATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTT 1975329
Query 46498 GTCCATGATCTT 46509
|||| |||||
Sbjct 1975328 GTCCTGAATCTT 1975317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565215945904560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |