Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq2 102 6e-17 seq6 95.1 8e-15 seq3 84.2 2e-11 >seq2 Length=27840087 Score = 102 bits (112), Expect = 6e-17 Identities = 165/236 (70%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 39484 CAATCATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTA 39543 |||| || ||| || |||| ||| || ||||| ||||||||| || || || || || Sbjct 185605 CAATGAT-GCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTG 185547 Query 39544 TAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGA 39603 || |||| || | |||| |||| |||| || || ||| | || || | |||||||||| Sbjct 185546 TAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGA 185487 Query 39604 TCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCG 39663 || | || | || |||||||| || || || | || | | ||||| | | Sbjct 185486 TCTGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAG 185427 Query 39664 CTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || ||||||||||| || || || || | |||||| |||||||| ||||| Sbjct 185426 GGCTCGACCTCCAAAGTAATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 185371 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || ||||| ||||| || |||||||| || || || |||| | | ||| || Sbjct 14207458 CGGAGCACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCA 14207517 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || |||||||| || || |||| |||| |||||||||||| | || | ||||||||| Sbjct 14207518 TCTTCCAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 14207577 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || || || ||| | || | | || || | ||| || || | ||| || Sbjct 14207578 TCCTGGATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATG 14207637 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||||| ||||| || ||||||||||| Sbjct 14207638 GTCTTACCCGTTAGGGTTTTAACAAAGATCTGCAT 14207672 >seq6 Length=26536676 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 39489 ATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATC 39548 || ||| || || | ||| || ||||| |||||||| || || || || || || || Sbjct 9461990 ATTGCCACCACGTAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTC 9462049 Query 39549 GGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 || || | |||| |||| |||| || || || | || || | |||||||||||| | Sbjct 9462050 GGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGG 9462109 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 ||| | || || ||||| || || |||| || | | ||||| | | || Sbjct 9462110 GGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGGCTC 9462169 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || ||||| || || ||||| || || ||||| || ||||||||||||||| Sbjct 9462170 GACCTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 9462221 >seq3 Length=22052390 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| |||| ||||||||||||||| | || || ||||| || || ||||||| | Sbjct 1975459 CCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGAC 1975400 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||| ||| || ||| | || || | |||||||||||| | ||| Sbjct 1975399 AGGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1975340 Query 39613 ACGCCTTCTTTGTC 39626 | ||||| ||||| Sbjct 1975339 ATACCTTCCTTGTC 1975326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347356145724074