Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq4 334 8e-87
seq2 141 9e-29
seq6 138 1e-27
seq3 113 5e-20
>seq4
Length=23952536
Score = 334 bits (370), Expect = 8e-87
Identities = 572/826 (69%), Gaps = 8/826 (1%)
Strand=Plus/Plus
Query 132606 TTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGT 132665
|||||||||||| || |||||||| || || ||||| || || |||| || || | |
Sbjct 3358164 TTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATCATCTC 3358223
Query 132666 CATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAG 132725
|||||| || || || || |||||| ||| | || || || | |||
Sbjct 3358224 CATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGTTCCACCAACAG 3358283
Query 132726 CCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACG 132785
| || || || || || || || | ||||| | | ||||| | || | ||
Sbjct 3358284 ACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATGCCAATCAATTT 3358343
Query 132786 CACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTC 132845
|| ||||| || || |||||||| |||||| |||| || || || | || ||| ||
Sbjct 3358344 GACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCAGAGATGATCTC 3358403
Query 132846 CCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTC 132905
| | |||| | ||| || ||||||||||||||| |||||||| |||||||||
Sbjct 3358404 AATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACATCATCACAGCAAAGTC 3358463
Query 132906 GCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAG 132965
||||||||||||||||| | || || | || ||| ||| |||| |||||||| ||
Sbjct 3358464 ACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCGGGCATCAG 3358523
Query 132966 GCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGAC 133025
|| ||||| || |||||||| || | ||| || ||||| |||||||| ||||| ||
Sbjct 3358524 ACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCCTCCAC 3358583
Query 133026 GGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAG 133085
||| ||||| || | | | |||||| || | || | || | ||||| ||
Sbjct 3358584 GGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTCGATGAAATCCAAGAGAG 3358643
Query 133086 CGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAG 133145
|||||| ||||||||| ||||| ||||| ||||| ||||| || |||| ||
Sbjct 3358644 CGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACA----GAT 3358699
Query 133146 TTTCTC-TTCC-GAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGT 133201
|| | |||| | ||| | | | || || ||||| || ||||| |||||||
Sbjct 3358700 AATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTACATCTCCGAGT 3358759
Query 133202 GTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTT 133261
| || ||||||||||||||||||||||| || || || || || ||| | ||||| |
Sbjct 3358760 GCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTTGCACCT 3358819
Query 133262 CTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGG 133321
| || ||| |||||||| ||||| || || || ||||| ||| |||||| || ||||
Sbjct 3358820 CCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAGGCGGCAAAGAAGG 3358879
Query 133322 CCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGT 133381
| ||||| || ||| || || |||||||| || | || || |||||||| | ||
Sbjct 3358880 CGAGCACATGGGAGATAAAGTGACGCTCGTTATCAGTTAAACGTGCCCAGTCGGTCAAGT 3358939
Query 133382 CCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427
| || || || |||||||| || || ||||| || || ||||| ||
Sbjct 3358940 CTTTAGAGAGATCCACCTCTTCCACAGTCCAGAATGAGGCCTCAGC 3358985
>seq2
Length=27840087
Score = 141 bits (156), Expect = 9e-29
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
||||||||||| ||||| ||||| ||||| ||||| ||||| || | || |||||| ||
Sbjct 185368 AAAATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATTACTTTGGAGGTCGAGCCC 185427
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | | | | | || | || |||| |||||||||||||| || | ||
Sbjct 185428 TCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGAT 185487
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| || || | ||| ||||| |||||||| || | ||||| || |||||||
Sbjct 185488 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTAC 185547
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||| || ||||| | || |||| |||||||| ||| || | || |||
Sbjct 185548 AACATTCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTGCGTGGTGGC 185598
Score = 105 bits (116), Expect = 7e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || || || ||||| || ||||| || |||||||| | || ||||| | |
Sbjct 14207673 AATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACCGTC 14207614
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | | | |||| || |||| |||||||| |||||||| | || ||
Sbjct 14207613 GGATACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCA 14207554
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | || ||||| || |||| || | ||||| || |||||||||
Sbjct 14207553 GCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTACAA 14207494
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||||||| || | || |||| |||||||| ||
Sbjct 14207493 CATCCAAAAAGAGTCAACCTTGCACTTGGTGCTCCG 14207458
>seq6
Length=26536676
Score = 138 bits (152), Expect = 1e-27
Identities = 160/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | || ||||||||||||||| | || |||||| || |
Sbjct 9462220 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACCTTGGAGGTCGAGCCCTCG 9462161
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | |||| | || |||| ||||| ||||| |||||| | || ||
Sbjct 9462160 GACACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 9462101
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| ||||| |||||||| || | ||||| || ||||||||||
Sbjct 9462100 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 9462041
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| ||||| | || |||| |||||||| |||
Sbjct 9462040 ATCCAGAAGGAGTCTACTTTGCACTTGGTGCTCCGT 9462005
>seq3
Length=22052390
Score = 113 bits (124), Expect = 5e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|||||||| || ||||| ||||| | ||||| || ||||||||| | || || ||| |
Sbjct 1974942 AAAATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCTTGGAGGTTGAGCCT 1975001
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
|||| | | | | |||| | || | || || | || || ||||||||||| | ||
Sbjct 1975002 TCCGATACCATTGAGAACG-TCAAGGCCAAGATTCAAGATAAGGAGGGAATTCCACCAGA 1975060
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
|| ||||| || || | ||| ||||| || ||||| || | |||||| | |||||
Sbjct 1975061 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGCCGCACCTTGTCTGACTA 1975120
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||| ||||| ||||| |||| || ||| |||| || ||| || | || ||
Sbjct 1975121 CAATATCCAGAAGGAGTCGACCCTTCATCTGGTCCTCCGTCTGCGTGGTGG 1975171
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500152930635520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |