Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4 334 8e-87 seq2 141 9e-29 seq6 138 1e-27 seq3 113 5e-20 >seq4 Length=23952536 Score = 334 bits (370), Expect = 8e-87 Identities = 572/826 (69%), Gaps = 8/826 (1%) Strand=Plus/Plus Query 132606 TTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGT 132665 |||||||||||| || |||||||| || || ||||| || || |||| || || | | Sbjct 3358164 TTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATCATCTC 3358223 Query 132666 CATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAG 132725 |||||| || || || || |||||| ||| | || || || | ||| Sbjct 3358224 CATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGTTCCACCAACAG 3358283 Query 132726 CCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACG 132785 | || || || || || || || | ||||| | | ||||| | || | || Sbjct 3358284 ACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATGCCAATCAATTT 3358343 Query 132786 CACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTC 132845 || ||||| || || |||||||| |||||| |||| || || || | || ||| || Sbjct 3358344 GACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCAGAGATGATCTC 3358403 Query 132846 CCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTC 132905 | | |||| | ||| || ||||||||||||||| |||||||| ||||||||| Sbjct 3358404 AATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACATCATCACAGCAAAGTC 3358463 Query 132906 GCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAG 132965 ||||||||||||||||| | || || | || ||| ||| |||| |||||||| || Sbjct 3358464 ACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCGGGCATCAG 3358523 Query 132966 GCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGAC 133025 || ||||| || |||||||| || | ||| || ||||| |||||||| ||||| || Sbjct 3358524 ACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCCTCCAC 3358583 Query 133026 GGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAG 133085 ||| ||||| || | | | |||||| || | || | || | ||||| || Sbjct 3358584 GGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTCGATGAAATCCAAGAGAG 3358643 Query 133086 CGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAG 133145 |||||| ||||||||| ||||| ||||| ||||| ||||| || |||| || Sbjct 3358644 CGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACA----GAT 3358699 Query 133146 TTTCTC-TTCC-GAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGT 133201 || | |||| | ||| | | | || || ||||| || ||||| ||||||| Sbjct 3358700 AATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTACATCTCCGAGT 3358759 Query 133202 GTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTT 133261 | || ||||||||||||||||||||||| || || || || || ||| | ||||| | Sbjct 3358760 GCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTTGCACCT 3358819 Query 133262 CTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGG 133321 | || ||| |||||||| ||||| || || || ||||| ||| |||||| || |||| Sbjct 3358820 CCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAGGCGGCAAAGAAGG 3358879 Query 133322 CCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGT 133381 | ||||| || ||| || || |||||||| || | || || |||||||| | || Sbjct 3358880 CGAGCACATGGGAGATAAAGTGACGCTCGTTATCAGTTAAACGTGCCCAGTCGGTCAAGT 3358939 Query 133382 CCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 | || || || |||||||| || || ||||| || || ||||| || Sbjct 3358940 CTTTAGAGAGATCCACCTCTTCCACAGTCCAGAATGAGGCCTCAGC 3358985 >seq2 Length=27840087 Score = 141 bits (156), Expect = 9e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| ||||| ||||| ||||| ||||| || | || |||||| || Sbjct 185368 AAAATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATTACTTTGGAGGTCGAGCCC 185427 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| |||||||||||||| || | || Sbjct 185428 TCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGAT 185487 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| ||||| |||||||| || | ||||| || ||||||| Sbjct 185488 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTAC 185547 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||||| | || |||| |||||||| ||| || | || ||| Sbjct 185548 AACATTCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTGCGTGGTGGC 185598 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || ||||| || ||||| || |||||||| | || ||||| | | Sbjct 14207673 AATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACCGTC 14207614 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | | | |||| || |||| |||||||| |||||||| | || || Sbjct 14207613 GGATACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCA 14207554 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| || |||| || | ||||| || ||||||||| Sbjct 14207553 GCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTACAA 14207494 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| || | || |||| |||||||| || Sbjct 14207493 CATCCAAAAAGAGTCAACCTTGCACTTGGTGCTCCG 14207458 >seq6 Length=26536676 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||||||||||||| | || |||||| || | Sbjct 9462220 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACCTTGGAGGTCGAGCCCTCG 9462161 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| | || |||| ||||| ||||| |||||| | || || Sbjct 9462160 GACACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 9462101 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| |||||||| || | ||||| || |||||||||| Sbjct 9462100 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 9462041 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| | || |||| |||||||| ||| Sbjct 9462040 ATCCAGAAGGAGTCTACTTTGCACTTGGTGCTCCGT 9462005 >seq3 Length=22052390 Score = 113 bits (124), Expect = 5e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| ||||| | ||||| || ||||||||| | || || ||| | Sbjct 1974942 AAAATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCTTGGAGGTTGAGCCT 1975001 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||| | | | | |||| | || | || || | || || ||||||||||| | || Sbjct 1975002 TCCGATACCATTGAGAACG-TCAAGGCCAAGATTCAAGATAAGGAGGGAATTCCACCAGA 1975060 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| || || | ||| ||||| || ||||| || | |||||| | ||||| Sbjct 1975061 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGCCGCACCTTGTCTGACTA 1975120 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| ||||| ||||| |||| || ||| |||| || ||| || | || || Sbjct 1975121 CAATATCCAGAAGGAGTCGACCCTTCATCTGGTCCTCCGTCTGCGTGGTGG 1975171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500152930635520