Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq1 109 2e-18
seq3 107 8e-18
seq2 100 1e-15
>seq1
Length=29979347
Score = 109 bits (120), Expect = 2e-18
Identities = 279/421 (66%), Gaps = 14/421 (3%)
Strand=Plus/Minus
Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252
|| ||||| | ||| |||| | | ||| || ||| || |||||| || |||||
Sbjct 6720492 GGCAAGCCTAAAATTGAAGTCGAATTTAAGGGCGAACGCAAGCGTTTTGCACCCGAAGAG 6720433
Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312
|| || ||||| | || || ||| ||||| || || ||| | || |||||
Sbjct 6720432 ATCAGCTCCATGGTGTTGACGAAGATGCGGGAAACTGCCGAGGTCTATCTGGG--CTCCA 6720375
Query 451313 --GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAA 451370
|| | ||||| || ||||| || || || || ||||| ||| | || || ||||| |
Sbjct 6720374 AGGTAAAGGATGCTGTCATTACGGTGCCGGCGTACTTCAACGATTCCCAGCGCCAAGCGA 6720315
Query 451371 CTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAG 451430
|||||||||| || || || ||||| ||||| || || || || ||||| || || |
Sbjct 6720314 CTAAAGATGCTGGCTCCATAGCCGGTTTGAATGTGCTGCGCATCATCAATGAGCCGACGG 6720255
Query 451431 CAGCTGCTCTAGCATATGGACT--AGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTT 451488
| ||||| || || ||||| || | |||||| ||| | ||| |||| | |
Sbjct 6720254 CGGCTGCCCTCGCCTATGGCCTGGACAAAAATCTGAAG-----GGAGAGCGAAATGTGCT 6720200
Query 451489 AGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGG--- 451545
| || ||||| || || || || ||| || |||| || || || || ||
Sbjct 6720199 GATCTTCGATTTGGGCGGCGGCACCTTTGACGTCTCCATACTCTCCATCGACGAGGGATC 6720140
Query 451546 GGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605
| | || ||||| ||||| || |||||||| ||||| || || || ||| | || ||
Sbjct 6720139 GCTGTTCGAAGTGAAGGCTACGGCAGGTGATACGCATCTGGGCGGCGAGGATTTCGACAA 6720080
Query 451606 T 451606
|
Sbjct 6720079 T 6720079
>seq3
Length=22052390
Score = 107 bits (118), Expect = 8e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | || ||||||||||| |||| || || || || || | || ||||| | ||
Sbjct 1974944 AATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCTTGGAGGTTGAGCCTTC 1975003
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
|||| |||||| | || || |||||||||||||| |||||||| || |||||
Sbjct 1975004 CGATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAGGGAATTCCACCAGATCA 1975063
Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228
|| ||| | || ||| | || || ||||| |||||||| | || ||| | || || ||
Sbjct 1975064 GCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGCCGCACCTTGTCTGACTACAA 1975123
Query 391229 TATTGATAAGGATGCAACACTTCA 391252
||| | ||||| | || |||||
Sbjct 1975124 TATCCAGAAGGAGTCGACCCTTCA 1975147
>seq2
Length=27840087
Score = 100 bits (110), Expect = 1e-15
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | || || |||||||| || || ||||| || || |||||||| || ||| | ||
Sbjct 14207673 AATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACCGTC 14207614
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
|||| ||| || | | ||| || || || || || |||||||||||||| |||||
Sbjct 14207613 GGATACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCA 14207554
Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228
|| ||| |||| || | || || ||| | |||||||| | ||| | | || || ||
Sbjct 14207553 GCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTACAA 14207494
Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258
|| | || || |||| | ||||| ||
Sbjct 14207493 CATCCAAAAAGAGTCAACCTTGCACTTGGT 14207464
Score = 86.0 bits (94), Expect = 2e-11
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | || ||||||||||| || || || || || |||||| | || || || | ||
Sbjct 185370 AATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATTACTTTGGAGGTCGAGCCCTC 185429
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||| | ||| || | | || || || ||||| || || ||||| || || |||||
Sbjct 185430 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCA 185489
Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228
|| ||| | || ||| | || || || || || |||||| | ||| || | || || ||
Sbjct 185490 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAA 185549
Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258
||| | ||||| | || | ||||| ||
Sbjct 185550 CATTCAGAAGGAGTCCACTTTGCACTTGGT 185579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975637952451224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |