Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1 109 2e-18 seq3 107 8e-18 seq2 100 1e-15 >seq1 Length=29979347 Score = 109 bits (120), Expect = 2e-18 Identities = 279/421 (66%), Gaps = 14/421 (3%) Strand=Plus/Minus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || ||||| | ||| |||| | | ||| || ||| || |||||| || ||||| Sbjct 6720492 GGCAAGCCTAAAATTGAAGTCGAATTTAAGGGCGAACGCAAGCGTTTTGCACCCGAAGAG 6720433 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || || ||||| | || || ||| ||||| || || ||| | || ||||| Sbjct 6720432 ATCAGCTCCATGGTGTTGACGAAGATGCGGGAAACTGCCGAGGTCTATCTGGG--CTCCA 6720375 Query 451313 --GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAA 451370 || | ||||| || ||||| || || || || ||||| ||| | || || ||||| | Sbjct 6720374 AGGTAAAGGATGCTGTCATTACGGTGCCGGCGTACTTCAACGATTCCCAGCGCCAAGCGA 6720315 Query 451371 CTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAG 451430 |||||||||| || || || ||||| ||||| || || || || ||||| || || | Sbjct 6720314 CTAAAGATGCTGGCTCCATAGCCGGTTTGAATGTGCTGCGCATCATCAATGAGCCGACGG 6720255 Query 451431 CAGCTGCTCTAGCATATGGACT--AGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTT 451488 | ||||| || || ||||| || | |||||| ||| | ||| |||| | | Sbjct 6720254 CGGCTGCCCTCGCCTATGGCCTGGACAAAAATCTGAAG-----GGAGAGCGAAATGTGCT 6720200 Query 451489 AGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGG--- 451545 | || ||||| || || || || ||| || |||| || || || || || Sbjct 6720199 GATCTTCGATTTGGGCGGCGGCACCTTTGACGTCTCCATACTCTCCATCGACGAGGGATC 6720140 Query 451546 GGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | | || ||||| ||||| || |||||||| ||||| || || || ||| | || || Sbjct 6720139 GCTGTTCGAAGTGAAGGCTACGGCAGGTGATACGCATCTGGGCGGCGAGGATTTCGACAA 6720080 Query 451606 T 451606 | Sbjct 6720079 T 6720079 >seq3 Length=22052390 Score = 107 bits (118), Expect = 8e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||||||||| |||| || || || || || | || ||||| | || Sbjct 1974944 AATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCTTGGAGGTTGAGCCTTC 1975003 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| |||||| | || || |||||||||||||| |||||||| || ||||| Sbjct 1975004 CGATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAGGGAATTCCACCAGATCA 1975063 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | || ||| | || || ||||| |||||||| | || ||| | || || || Sbjct 1975064 GCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGCCGCACCTTGTCTGACTACAA 1975123 Query 391229 TATTGATAAGGATGCAACACTTCA 391252 ||| | ||||| | || ||||| Sbjct 1975124 TATCCAGAAGGAGTCGACCCTTCA 1975147 >seq2 Length=27840087 Score = 100 bits (110), Expect = 1e-15 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || |||||||| || || ||||| || || |||||||| || ||| | || Sbjct 14207673 AATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACCGTC 14207614 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||| || | | ||| || || || || || |||||||||||||| ||||| Sbjct 14207613 GGATACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCA 14207554 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| |||| || | || || ||| | |||||||| | ||| | | || || || Sbjct 14207553 GCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTACAA 14207494 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 || | || || |||| | ||||| || Sbjct 14207493 CATCCAAAAAGAGTCAACCTTGCACTTGGT 14207464 Score = 86.0 bits (94), Expect = 2e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||||||||| || || || || || |||||| | || || || | || Sbjct 185370 AATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATTACTTTGGAGGTCGAGCCCTC 185429 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | ||| || | | || || || ||||| || || ||||| || || ||||| Sbjct 185430 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCA 185489 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | || ||| | || || || || || |||||| | ||| || | || || || Sbjct 185490 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAA 185549 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || | ||||| || Sbjct 185550 CATTCAGAAGGAGTCCACTTTGCACTTGGT 185579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975637952451224