Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1 250 2e-60 seq3 96.9 3e-14 seq518 95.1 9e-14 >seq1 Length=29979347 Score = 250 bits (276), Expect = 2e-60 Identities = 946/1465 (65%), Gaps = 22/1465 (2%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 || || ||||| |||||||| |||||||| | || || || || ||||| |||||||| Sbjct 13815851 GCGGTGACATTCAGAATACCGTTGGCATCAATGTCGAAGGTCACCTCAATCTGAGGGACA 13815910 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | | || ||||| || || ||| | || | |||| |||||| || ||| Sbjct 13815911 CCGCGTGGTGCGGGTGGAATGCCCGACAACTCGAACTTGCCCAACAGATTATTGTCCTTA 13815970 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || | || ||||| ||| | | |||||| || | | || || || || || Sbjct 13815971 GTCATGGCACGCTCACCTTCGTAGACTTGGATCAACACACCGGGCTGGTTGTCCGAGTAG 13816030 Query 517439 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 517497 || || || ||||| | | || || || || ||||| | | || | | | Sbjct 13816031 GTGGTGAAGG-TCTGGGTCTGCTTTGTGGGGATGGTGGTGTTGCGCTTGATCAACACGCT 13816089 Query 517498 CATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 517557 ||| | || || || || || | ||| || || || || |||||||| | || | | Sbjct 13816090 CATCACGCCGCCAGCGGTCTCGATACCCAGCGACAGGGGGGTGACATCGAGCAGCAACAG 13816149 Query 517558 ATTTTGAAGTTTTT-CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCAT 517616 || || | || | | | | | | ||||| |||| || || | |||||||||| Sbjct 13816150 ATCCTGCACTTCCTGCGACTTGTCGCCGTGCAAGA-TAGCAGCCTGGACGGCAGCACCAT 13816208 Query 517617 ATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-T 517675 | |||||||| ||||| || || | | | || || | || || ||||| | || | Sbjct 13816209 AGGCAACAGCCTCATCGGGGTTGATGGACTTGTTCAGCTCCTTGCCGTTGAACAGATCCT 13816268 Query 517676 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 517735 | || | | | ||||| || ||||| | || || || || || ||||| || || Sbjct 13816269 GCAATAGGCGCTGC-ACCTTGGGGATACGGGTGGAGCCACCGACCAACACAATATCGTGA 13816327 Query 517736 ACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCT 517795 | || || |||| ||| | ||| || | || || ||||| || | ||| Sbjct 13816328 ATGGCCGACTTGTCCAATTTAGCATCACGCAATGCCTTCTCCACGGGGTCCATGGT-GCT 13816386 Query 517796 -CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GAG-TGACATTATA 517851 | |||| || | || ||||| || ||| | |||| ||| || || | Sbjct 13816387 GCGGAACAGATCAGCGTTCAGCTCTTCAAAACGAGCGCGCGTAATCGAGGTG----TAGA 13816442 Query 517852 A-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 | || | || ||||||| ||||| | ||||| | | || || || || || || | Sbjct 13816443 AGTCGGTACCCTCGAACAGCGAATCGATCTCAATGCTCGCCTGGGTAGATGAGGAAAGAG 13816502 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--T 517968 ||| || ||||| ||||| || || | ||| | || | || ||| ||| | | Sbjct 13816503 TACGCTTTGCACGCTCACAGGCAGTGCGTAGACGACGCAGAGCAC--GCTTGTTGGTAGT 13816560 Query 517969 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 518028 || ||| | || | || | |||||| || | ||| | || || |||||||| || Sbjct 13816561 CAGATCCTTCTTGTGCTTGCGCTTGAACTCCTGCACAAAGTGAGTGACTAGACGATTGTC 13816620 Query 518029 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 518088 ||||| ||||| ||||| | || | || | |||| | | || | ||| | || || Sbjct 13816621 GAAATCCTCACCACCCAAATGGGTGTCACCAGCAGTAGATTTGACCTCGAAGATGCCGTC 13816680 Query 518089 TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148 |||| |||| || | |||||| || ||||| |||| ||| ||||| | ||||| Sbjct 13816681 ATCAATCGACAGAATGGAGACATCAAAAGTACCACCGCCCAAATCGAAAATCAACACATT 13816740 Query 518149 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 518208 ||| | || || || || ||||| || | || |||||||| || ||||| Sbjct 13816741 ACGTTCACCAACAGCCTTCTTGTCCAGGCCATAAGCGATGGCCGCAGCAGTCGGCTCATT 13816800 Query 518209 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 518268 ||||| | ||| || || | ||| || || | || ||||| || || || || | || Sbjct 13816801 GATAATACGCAATACGTTCAAACCGGCGATGGTGCCAGCATCCTTGGTAGCCTGACGCTG 13816860 Query 518269 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATA 518328 ||||||||| ||||| || || |||||||| ||||||| || || || || | || Sbjct 13816861 TGAATCGTTGAAATAGGCGGGCACAGTAATGACGGCATTGGTAACCGTCTTGCCCAGGTA 13816920 Query 518329 AGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATA 518388 || || || | ||||| || | || | ||| || || || | || |||||| | Sbjct 13816921 CGCCTCGGCGGTCTCCTTCATCTTGGTCAACACCATGGAGGAGATCTCCTC-GGGGAAGA 13816979 Query 518389 TTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 518447 | ||| |||| | || | || || | | || || | |||| |||| | Sbjct 13816980 AAGTCTTCTTCTCATCCTTGTACGTAACCTCGATCTTGGGCTTGCCATCAACGTTAACGA 13817039 Query 518448 CTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 518507 | | || ||||||| |||||||| || || || |||| || | | ||||| Sbjct 13817040 CCTCGAAAGGCCAGTGCTTCATATCAGACTGKACGGCCGCATCATCGAATTTGCGACCAA 13817099 Query 518508 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTG 518567 | | || || ||||| || ||||| | |||||| || || || | || | ||||| | Sbjct 13817100 TCAGACGCTTAGCATCGAAGATAGTTTGGGTTGGGTTCATGGCCACCTGGTTCTTGGCGG 13817159 Query 518568 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 518627 | || ||||||| | | || ||||| || || | |||||| ||||| || || ||||||| Sbjct 13817160 CGTCACCAATCAAACGCTCCGTCTCCGTGAAGGCAACATAAGATGGGGTGGTACGATTAC 13817219 Query 518628 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 518687 | ||||| || ||||| || ||||| || |||| || | ||||| || ||| | | Sbjct 13817220 CCTGATCGTTGGCAATGATCTCAACCTTGCCATGCTGGAACACACCCACGCAAGAGTAGG 13817279 Query 518688 TTGTTCCTAAATCAATACCAATAGC 518712 |||| || ||||||||||||| ||| Sbjct 13817280 TTGTGCCCAAATCAATACCAACAGC 13817304 Score = 111 bits (122), Expect = 1e-18 Identities = 211/306 (69%), Gaps = 11/306 (4%) Strand=Plus/Plus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 || || ||||| || ||||| || || |||| | |||| |||| |||||| | ||| Sbjct 6720071 ACCAGCCGATTGTCGAAATCCTCGCCGCCCAGATGCGTATCACCTGCCGTAGCCTTCACT 6720130 Query 518075 TGGAAAAG---TCCATCTTCAA--GAGACAAAAGAGTTACATCATGGGTTCCACCACCCA 518129 | ||| || ||| || || | |||| | ||| || ||| ||| || || |||| Sbjct 6720131 TCGAACAGCGATCCCTCGTCGATGGAGAGTATGGAG--ACGTCAAAGGTGCCGCCGCCCA 6720188 Query 518130 TATCAAAAATAAGTACATTCATTTCTTTGTCTT--GGTTTTTATCAAGACCATACGCAAA 518187 ||| || || || ||||| | || | ||| | ||||| || || ||||| || | Sbjct 6720189 AATCGAAGATCAGCACATT--TCGCTCTCCCTTCAGATTTTTGTCCAGGCCATAGGCGAG 6720246 Query 518188 AGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGC 518247 ||||| || || || ||||| || || | || ||||| | ||| || || || || Sbjct 6720247 GGCAGCCGCCGTCGGCTCATTGATGATGCGCAGCACATTCAAACCGGCTATGGAGCCAGC 6720306 Query 518248 ATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 518307 ||||||||| ||||| | || |||||||| || || || || || ||||| || ||||| Sbjct 6720307 ATCTTTAGTCGCTTGGCGCTGGGAATCGTTGAAGTACGCCGGCACCGTAATGACAGCATC 6720366 Query 518308 AGTTAC 518313 |||| Sbjct 6720367 CTTTAC 6720372 Score = 105 bits (116), Expect = 5e-17 Identities = 449/700 (64%), Gaps = 17/700 (2%) Strand=Plus/Minus Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 518083 || || || || || || |||| | ||||| ||| | || ||||| |||| || || Sbjct 5776899 TTGTCGAAGTCCTCTCCGCCCAGATGAGTATCTCCAGCAGTGGCTCTCACTTCRAACAGA 5776840 Query 518084 ---CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 || || || | | || | | ||||| ||| || ||||||| || || || Sbjct 5776839 GAGCCCTCGTCGATGGTCAGGATTGACACATCGAAGGTGCCGCCACCCAAGTCGAATATT 5776780 Query 518141 AGTACATTCATTTCTTTGTCTTGG---TTTTTATCAAGACCATACGCAAAAGCAGCAGCA 518197 || ||||| ||| | ||| | || || || | ||||| || | ||| || ||| Sbjct 5776779 AGAACATTGCGTTC---GCCTTTGAGATTCTTGTCCAAGCCATAGGCCAGAGCTGCTGCA 5776723 Query 518198 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 518257 || || ||||| || || | || || || || || || || || || ||||| || Sbjct 5776722 GTGGGCTCATTGATGATGCGCAGCACGTTCAGCCCGGCGATGGCACCGGCGTCTTTGGTT 5776663 Query 518258 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCT 518317 ||||| | || || || || || || ||||| ||||| || ||||| || | | Sbjct 5776662 GCTTGACGCTGCGAGTCATTGAAGTAGGCAGGCACAGTGATGACGGCGTCTCTGATGGTG 5776603 Query 518318 TTACCAATATAAGCGCTTGCCGTTTGTTTCAT-TTTACTTAAAATCATTGATGAAATTTG 518376 | || | ||||| ||||| | ||||| ||||| | || ||| || || | Sbjct 5776602 GTGCCCAAGTAAGCTTCGGCCGTCTCCTTCATCTTTACC-AGAACCATCGAGCTGATCTC 5776544 Query 518377 TTCTGGGGAATATTGCTTGGATTCAT-TTTGATAT-GATACTTCAAAATATGGTTTATTA 518434 || || | | | |||| ||| ||||| | || | || | | |||||| Sbjct 5776543 CTCCGGCGCAAAGCGCTTCTGTTCGCCTTTGAACTCGACATTT--ATCTTTGGTTTGCCG 5776486 Query 518435 CCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG-TCATT 518493 | | || | ||||| |||||||||| ||||| || |||| ||| || |||| Sbjct 5776485 CAGTCGTTGACCACTTTGAATGGCCAGTGCTTCATGTCGCCCTGAAT-CTTCGGATCATC 5776427 Query 518494 AAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGC 518553 | | | | ||||| || || || ||||| || | ||| || ||||||| || || | Sbjct 5776426 ATATTTACGTCCAATCAAACGCTTCGCATCGAATACAGTGTTACTTGGATTCATGGCCAC 5776367 Query 518554 TTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGG 518613 ||| | ||||| || |||||||||| || | || ||||||| || || || Sbjct 5776366 TTGGTTCTTGGCCGCGTCTCCAATCAACCTCTCCGAGTCGGTAAATGCCACRTAGCTGGG 5776307 Query 518614 AGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACC 518673 || ||||| || || || || || || || || || || || || | || | ||||| Sbjct 5776306 CGTGGTGCGGTTGCCCTGGTCGTTGGCTATTATCTCCACCTTGCCGTGCTGGAAAACACC 5776247 Query 518674 TACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 ||||| | || ||||| || ||||||||||| ||| Sbjct 5776246 AACACAGGAGTAGGTGGTTCCCAAGTCAATACCAATTGCA 5776207 Score = 105 bits (116), Expect = 5e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 518555 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 518614 |||| ||| |||||||| ||||| || | ||||| || |||| | ||||| || || Sbjct 6721099 TGATTTTTAGCTGCATCGCCAATTAGGCGCTCTGTGTCGTTAAAGGCCACATACGAGGGC 6721158 Query 518615 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 518674 || || ||||| ||||||||||| |||||||| ||||||||| || ||||| ||||| Sbjct 6721159 GTCGTCCGATTGCCTTGATCATTGGCAATAATCTCAACTTTATTGTTCTGCCAAACACCC 6721218 Query 518675 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 || || | || || || | ||| |||||||| || Sbjct 6721219 ACGCAGGAGTAGGTGGTGCCCAGATCGATACCAATTGC 6721256 >seq3 Length=22052390 Score = 96.9 bits (106), Expect = 3e-14 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 ||||| ||| || || |||| |||||| || || |||||| ||| || | | | Sbjct 14674712 ACATCGAAGGTGCCGCCGCCCAGATCAAAGATCAGCACATTCCGTTCACTGCCGCCCTGT 14674771 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || || || || || |||| || || || ||||| ||||| || || | || ||||| Sbjct 14674772 TTGTCCAGGCCGTAGGCAATGGCCGCCGCCGTTGGCTCATTGATGATGCGCAGCACATTG 14674831 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 || || || || || ||||| || ||||| || || || ||||| || || || || Sbjct 14674832 AGTCCGGCTATGACGCCCGCATCCTTGGTGGCCTGCCTCTGCGAATCATTGAAGTAGGCG 14674891 Query 518288 GGAACAGTAATAACGGCATCAGT 518310 || ||||| ||||||||||| || Sbjct 14674892 GGCACAGTGATAACGGCATCGGT 14674914 >seq518 Length=3401 Score = 95.1 bits (104), Expect = 9e-14 Identities = 123/169 (73%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 870799 TATT-GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGAT 870857 |||| || || | |||||||||||| || || ||| |||||||| |||| |||||| | | Sbjct 3071 TATTAGTTGACTTTTCTTCTCCAAACATCGCAAAACAAATGCATGTTGGTCATTTACGTT 3130 Query 870858 CAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATC 870917 | || || ||||| || || || |||||| | | ||| | ||| || ||| || Sbjct 3131 CCACCATAATTGGCGAGTCAATCTGTAGGCTTCTTGAATTTCTACAACATGACGTTATTC 3190 Query 870918 GTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 870966 | || |||||| | || ||||||||||| || || || ||| | || || Sbjct 3191 GCATCAATCATCTTGGGGATTGGGGAACGCAGTTTGGCATGCTCATAGC 3239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780664697171668