Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 111 2e-19 >seq2 Length=27840087 Score = 111 bits (122), Expect = 2e-19 Identities = 385/587 (66%), Gaps = 14/587 (2%) Strand=Plus/Plus Query 112072 AGGAGGCGCG--GTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGA 112128 |||||| || |||| |||||||| || | || | ||||| || ||||| || |||| Sbjct 27784009 AGGAGGAGCATCGTGCACGCGATCTTTTTTTTGCATTGTGGATACCTGATCTTTTTATGA 27784068 Query 112129 AGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCT 112188 | | ||||| | | || | ||||| | | |||||| | || || || ||| Sbjct 27784069 AACGTGTTGAAGCTAATGAAGACTGGTCATTAATGTGTCCACATAAATGCCCTGGCCTCC 27784128 Query 112189 CCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGG 112248 | |||| |||||| || |||||| |||||| | || || || ||| | || | Sbjct 27784129 CAGATGTTTGGGGTGAAGATTTTGAAAACCTCTATATCAAATATGAACGAGAGGGACGAG 27784188 Query 112249 CGACTGCGACGGTGCCA--GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGA 112306 ||| | ||| | | | ||| | | ||| || || | | |||||| || Sbjct 27784189 CGAAT-CGA-GTTATTAAGGCTCAATCTCTTTGGTTTGCCATCATTGAATCTCAAGTAGA 27784246 Query 112307 GACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAA 112366 ||||||||| || || ||| | | || ||| | |||||| ||| || || ||| | || Sbjct 27784247 GACTGGTACTCCTTACATGTTATTTAAGGACTCTTGTAACAGAAAAAGCAACCAACAAAA 27784306 Query 112367 TTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGA 112426 | | || || || | || || || |||||||| | |||| | | | ||| Sbjct 27784307 TGTTGGAACTATAAAATGCAGTAATCTGTGCACAGAAATAGTTGAATATTCGGCACCAGA 27784366 Query 112427 TGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGAC 112486 ||| | ||||||||||| | || || ||||| || | || ||| || ||| || Sbjct 27784367 TGAAATAGCTGTGTGTAATTTGGCGTCTATCGCACTTAATATGTTTGT-GACGCAG-GAG 27784424 Query 112487 AAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAA 112546 ||| | | ||| | | |||| || | ||||| || |||| || || |||||| |||| Sbjct 27784425 AAA-TCTTATGACTTTAAAAAGCTTAAAGAAGTAACTAAAATCGTTACGAAAAACTTAAA 27784483 Query 112547 CAGAGTTATTGATAGAAATTTTTACCCCGTTG--AGACTGCTCGTAAATCTAATATGAGA 112604 | | | ||||||| ||||| || ||| ||| ||| ||| ||||| ||| | | Sbjct 27784484 TAAAATAATTGATATAAATTACTA-CCCTTTGCCAGA-AGCTAAAAAATCAAATTTACGT 27784541 Query 112605 CACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT 112651 |||||||| |||||| | || |||||||| | ||||| | ||| || Sbjct 27784542 CACCGTCCTATTGGTATTGGAGTCCAAGGGTTTGCGGACGCATTAAT 27784588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620717741008160