Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3 156 9e-33 seq2 147 5e-30 seq6 134 3e-26 >seq3 Length=22052390 Score = 156 bits (172), Expect = 9e-33 Identities = 167/217 (77%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 || || ||||| || ||||| || || |||||||| || | |||| || | |||||||| Sbjct 1975153 ACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAG-GTGCGGCCATCTTC 1975095 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || ||||| || |||||||| || || || || ||||| ||||| || || || ||||| Sbjct 1975094 CAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATTCCCTCCTTATCTTG 1975035 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || |||||||||||||||||| || ||| || || || | ||| | ||||| Sbjct 1975034 AATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAGGTGATGGTCTT 1974975 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGT 195147 ||| ||||||||||| ||||| | ||||||| |||| Sbjct 1974974 TCCCGTCAAAGTTTTAACGAAGATCTGCATTT-TGGT 1974939 >seq2 Length=27840087 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | ||||||||| || ||||| ||||| |||| ||||| | ||||| || ||||| Sbjct 185574 GTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTG 185515 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || || ||||| || || || ||||||||||| || || Sbjct 185514 CTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTT 185455 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| ||||| |||||||| || || || || | |||| ||||| || || Sbjct 185454 GGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAAGTAATGGTCTTGCCGGT 185395 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 | |||||| ||||| | |||||||| Sbjct 185394 GAGAGTTTTAACGAAGATTTGCATTT 185369 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||||||||| || ||||| |||| |||||| | |||||||| | ||||| || Sbjct 14207476 GTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAATTGCTTGCCA 14207535 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| || || || || ||||||||||| ||||||||||| || || || ||| Sbjct 14207536 GCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTG 14207595 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || ||||| ||||| ||||| ||| || ||||| || | ||||| || || | ||| Sbjct 14207596 ACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTTAGGGTT 14207655 Query 195124 TTTACGAACACTTGCATT 195141 || || || | |||||| Sbjct 14207656 TTAACAAAGATCTGCATT 14207673 >seq6 Length=26536676 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | ||| ||||| || || || ||||| |||| ||||| | ||||| || ||||| Sbjct 9462017 GTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTG 9462076 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || || ||||| ||||| || || |||||||| || || Sbjct 9462077 CTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTT 9462136 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || ||||||||||||||||| || || || | ||| | || || || || Sbjct 9462137 GGCCTTAACATTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTTTTGCCAGT 9462196 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || ||||| | ||||| Sbjct 9462197 CAAAGTCTTGACGAAGATCTGCAT 9462220 Score = 131 bits (144), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| || ||||| || || || || || |||| ||||| | ||||| || Sbjct 9462240 ACCAGATGAAGGGTCGACTCCTTCTGGATGTTRTAGTCGGACAGAGTGCGTCCATCCTCC 9462299 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || || ||||| ||||| || || |||||||| Sbjct 9462300 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGG 9462359 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || |||||||||||||| || || || | || | ||||| Sbjct 9462360 ATCTTGGCCTTAACATTTTCAATGGTGTCCGAGGGCTCAACCTCCAAAGTGATGGTCTTG 9462419 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| || ||||| | ||||| Sbjct 9462420 CCAGTCAAAGTCTTGACGAAGATCTGCAT 9462448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109436423989526