Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq2 102 5e-17
seq6 95.1 8e-15
seq3 91.5 1e-13
>seq2
Length=27840087
Score = 102 bits (112), Expect = 5e-17
Identities = 152/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| || ||||||||||| ||||| || || | ||| |||| |||
Sbjct 185579 ACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 185520
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || ||||| || || || || ||||| ||| | || | ||||| |||||
Sbjct 185519 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGG 185460
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
||||| ||||| || || || | ||| || ||| || || | || ||||| |
Sbjct 185459 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAAGTAATGGTCT 185402
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
| || |||||||| || || ||||| ||||| ||
Sbjct 185401 TGCCGGTGAGAGTTTTAACGAAGATTTGCATTTT 185368
Score = 82.4 bits (90), Expect = 5e-11
Identities = 148/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | || ||||| || ||||| ||||| ||||| | || |||| |||
Sbjct 14207464 ACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCC 14207523
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| || || || ||||| ||||| || ||||| ||| | || | || || |||||
Sbjct 14207524 AATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGG 14207583
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCG-ATTCACCGGCCTCAACATCGACGGTTATGGTT 34949
||||| |||||| || || || | || | ||| || || || | || |||||
Sbjct 14207584 ATCTTGGCTTTGAC--ATTCTCGATGGTATCCGACGGT-TCGACCTCAAGAGTGATGGTC 14207640
Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| ||||| || || || ||||||||||||||
Sbjct 14207641 TTACCCGTTAGGGTTTTAACAAAGATCTGCAT 14207672
>seq6
Length=26536676
Score = 95.1 bits (104), Expect = 8e-15
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || || | ||| |||| |||||||| || || || ||
Sbjct 9462258 TCCTTCTGGATGTTRTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAG 9462317
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||| ||| | || | ||||||||||| ||||| || || |
Sbjct 9462318 ATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTT 9462377
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || || |||||| || | || ||||| || || || | |||||| ||
Sbjct 9462378 TCAATGGTGTCCGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGACG 9462437
Query 34971 AAGATCTGCATATT 34984
||||||||||||||
Sbjct 9462438 AAGATCTGCATATT 9462451
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | || || ||||| ||||| ||||| || || | ||| |||| |||
Sbjct 9462012 ACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 9462071
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || || || || || || ||||| ||| | || | |||||||||||
Sbjct 9462072 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGG 9462131
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
||||| || || || || || | || || ||| || || | ||| |||||||
Sbjct 9462132 ATCTTGGCCTTAAC--ATTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTTT 9462189
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || || | |||||| || |||||||||||
Sbjct 9462190 TGCCAGTCAAAGTCTTGACGAAGATCTGCAT 9462220
>seq3
Length=22052390
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| || || ||||| || | | | || |||| ||||| || || ||||| ||
Sbjct 1975135 TCCTTCTGGATATTGTAGTCAGACAAGGTGCGGCCATCTTCCAGTTGCTTGCCGGCGAAG 1975076
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||| ||| | || | |||||||| || |||||| ||||||
Sbjct 1975075 ATCAGACGCTGCTGATCTGGTGGAATTCCCTCCTTATCTTGAATCTTGGCCTTGACGTTC 1975016
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | |||||| || | ||| ||||| |||||||| | ||| || ||
Sbjct 1975015 TCAATGGTATCGGAAGGCTCAACCTCCAAGGTGATGGTCTTTCCCGTCAAAGTTTTAACG 1974956
Query 34971 AAGATCTGCATATTCGTA 34988
||||||||||| || |||
Sbjct 1974955 AAGATCTGCATTTTGGTA 1974938
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324621026331984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |