Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2 102 5e-17 seq6 95.1 8e-15 seq3 91.5 1e-13 >seq2 Length=27840087 Score = 102 bits (112), Expect = 5e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||||||||| ||||| || || | ||| |||| ||| Sbjct 185579 ACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 185520 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || ||||| ||| | || | ||||| ||||| Sbjct 185519 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGG 185460 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | ||| || ||| || || | || ||||| | Sbjct 185459 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAAGTAATGGTCT 185402 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || |||||||| || || ||||| ||||| || Sbjct 185401 TGCCGGTGAGAGTTTTAACGAAGATTTGCATTTT 185368 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || ||||| || ||||| ||||| ||||| | || |||| ||| Sbjct 14207464 ACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCC 14207523 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || || || ||||| ||||| || ||||| ||| | || | || || ||||| Sbjct 14207524 AATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGG 14207583 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCG-ATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| |||||| || || || | || | ||| || || || | || ||||| Sbjct 14207584 ATCTTGGCTTTGAC--ATTCTCGATGGTATCCGACGGT-TCGACCTCAAGAGTGATGGTC 14207640 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || || || |||||||||||||| Sbjct 14207641 TTACCCGTTAGGGTTTTAACAAAGATCTGCAT 14207672 >seq6 Length=26536676 Score = 95.1 bits (104), Expect = 8e-15 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | ||| |||| |||||||| || || || || Sbjct 9462258 TCCTTCTGGATGTTRTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAG 9462317 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | ||||||||||| ||||| || || | Sbjct 9462318 ATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTT 9462377 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || |||||| || | || ||||| || || || | |||||| || Sbjct 9462378 TCAATGGTGTCCGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGACG 9462437 Query 34971 AAGATCTGCATATT 34984 |||||||||||||| Sbjct 9462438 AAGATCTGCATATT 9462451 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || || | ||| |||| ||| Sbjct 9462012 ACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 9462071 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || ||||| ||| | || | ||||||||||| Sbjct 9462072 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGG 9462131 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | || || ||| || || | ||| ||||||| Sbjct 9462132 ATCTTGGCCTTAAC--ATTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTTT 9462189 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | |||||| || ||||||||||| Sbjct 9462190 TGCCAGTCAAAGTCTTGACGAAGATCTGCAT 9462220 >seq3 Length=22052390 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| || | | | || |||| ||||| || || ||||| || Sbjct 1975135 TCCTTCTGGATATTGTAGTCAGACAAGGTGCGGCCATCTTCCAGTTGCTTGCCGGCGAAG 1975076 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | |||||||| || |||||| |||||| Sbjct 1975075 ATCAGACGCTGCTGATCTGGTGGAATTCCCTCCTTATCTTGAATCTTGGCCTTGACGTTC 1975016 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | |||||| || | ||| ||||| |||||||| | ||| || || Sbjct 1975015 TCAATGGTATCGGAAGGCTCAACCTCCAAGGTGATGGTCTTTCCCGTCAAAGTTTTAACG 1974956 Query 34971 AAGATCTGCATATTCGTA 34988 ||||||||||| || ||| Sbjct 1974955 AAGATCTGCATTTTGGTA 1974938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324621026331984