Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq2 499 3e-136
>seq2
Length=27840087
Score = 499 bits (552), Expect = 3e-136
Identities = 1226/1868 (66%), Gaps = 14/1868 (1%)
Strand=Plus/Minus
Query 46980 ACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTCTTT 47039
||||| || | || | |||| ||||| |||||| || | ||||||||| || |||||
Sbjct 27785305 ACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTA 27785246
Query 47040 AAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAA 47099
| ||| ||||| ||| ||||| || |||||||| |||| | ||||| |
Sbjct 27785245 AGACCCGCTTTCCATGAATAAAAATGGATTGACGTTAATTTTCCATAATTGGGTTCAGCT 27785186
Query 47100 ATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCT 47159
| ||||||||| | ||| ||||| ||||||||||| || ||||||||||| ||||| | |
Sbjct 27785185 ACATGAATATTGAAAGACTGACTTTGATCAATAAACGCTCCTCTATCAGCCGCCATTTTT 27785126
Query 47160 AAAATAACCCTTTG--TGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTG 47217
| | | |||| || || ||||| || |||||||| | | ||| |||| |
Sbjct 27785125 ATAGTTGA--TTTGACTGAAATTTCCCACACAGTTTTATACAAATCACGAATTTCTTTAG 27785068
Query 47218 GGA--GATT-AGTATTTTGAATAGATCCTCCgttttctataattttgttttttaattcat 47274
| | |||| | ||||||| || || || | || ||| |||| ||||| | || |
Sbjct 27785067 GAATAGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCTCGT 27785008
Query 47275 ttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAATT 47334
||| | | |||||||||| || | || | || || | |||||||
Sbjct 27785007 CATCCCACAAATCAAGTTCAGTTAAATCACGTAGTAAGTGGTGGTTCACTACCTGAAATT 27784948
Query 47335 CTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTAT 47394
| ||||| | |||| | | || || || ||||| || || | || |||||||
Sbjct 27784947 CGCCAGACAAAACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTAT 27784888
Query 47395 TTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTA 47454
| || || ||||| ||||| |||||||||||||||| || | | ||| |||||| |
Sbjct 27784887 TGCCCAATATTTGCGCAGTGGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGA 27784828
Query 47455 CTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAA 47514
| || | || ||| ||||||||||||||||||| |||
Sbjct 27784827 CACCGTGTTGCGCTATAGATTTTTTAAGAGCATTCCAATCCCAAAGATCTGTTGGTGATT 27784768
Query 47515 CATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTAT 47574
||||| | |||||| || | ||||||||| |||| ||| ||| ||| || | ||
Sbjct 27784767 TTTTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTGCCAACATAAGTCTCAT 27784708
Query 47575 AAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATATTGTTT 47634
| || || | | | ||| | |||||| || |||||||| || | ||| ||||| ||||
Sbjct 27784707 ATGGTCCATCTCTCTGAGCTAATTCACAGCTGGCTTCCAAAGCTCCATAGTATATAGTTT 27784648
Query 47635 CAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGA--TTCAAAAGGATANNNNNNNNN 47692
| || || | |||| |||||| | || ||| | | |||
Sbjct 27784647 CGAAAATCTGCTGATTTAATAAAAATGCTTC--ACGACTTTCGTAGGAATACCGCATTAA 27784590
Query 47693 NNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGA 47752
|||| || || || ||||| || ||||||||||| || | ||| | ||| ||
Sbjct 27784589 TATTAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAATTTGA 27784530
Query 47753 AAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNN 47812
| ||||||||| || || || | |||||||| || ||||||||||
Sbjct 27784529 TTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGT 27784470
Query 47813 NNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAAC---TTGTTATTTATAACAAA 47869
| |||| | | || ||||| ||| | || | | | |||||
Sbjct 27784469 AACGATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCACAAA 27784410
Query 47870 CCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTG 47929
| |||||||||| ||||| || | |||||| ||||||| |||| ||| | |||||
Sbjct 27784409 CATATTAAGTGCGATAGACGCCAAATTACACACAGCTATTTCATCTGGTGCCGAATATTC 27784350
Query 47930 TATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNN 47989
| |||||| | || ||||||| ||||| ||||| || | |||||| || || |
Sbjct 27784349 AACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTT 27784290
Query 47990 NTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAAT 48049
||||||| | |||||| | | ||| |||| || ||||| |||| |||||||||||
Sbjct 27784289 TCTGTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTCAAT 27784230
Query 48050 GATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTA 48109
||| | ||||| || |||||| ||||| | ||| || |||| ||
Sbjct 27784229 GATGGCAAACCAAAGAGATTGAGCCTTAATAACTCGATTCGCTCGTCCCTCTCGTTCATA 27784170
Query 48110 TTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATT 48169
||| |||| | || ||||| || || || | |||| | ||||| |||| ||
Sbjct 27784169 TTTGATATAGAGGTTTTCAAAATCTTCACCCCAAACATCTGGGAGGCCAGGGCATTTATG 27784110
Query 48170 AGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTAT 48229
|||||||| |||||||| || |||| | || || | ||||||| | ||| |||||
Sbjct 27784109 TGGACACATTAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATCAGGTAT 27784050
Query 48230 CCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAG 48289
||| | || | ||| | ||| | | | | || || || ||| |||| |||||||
Sbjct 27784049 CCACAATGCAAAAAAAAGATCGCGTGCACGATGCTCCTCCTTTCCAGTATTTTTTTTAAG 27783990
Query 48290 TTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGG 48349
|| | ||| || | | ||| | ||||| || || |||||||| || | | | || ||
Sbjct 27783989 GTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAAATATATAGCAAATGCTCCAGG 27783930
Query 48350 TCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGG 48409
|| |||| ||| || ||||| | ||| | || ||| ||| | ||||||||||||||
Sbjct 27783929 TCTTTTACCACCGCCCTGATCAACATAACGCGCGACATTATTAAATACTCTTAACATTGG 27783870
Query 48410 GACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT 48469
|| | |||||||| | || || ||||| |||| | | || |||||| |||
Sbjct 27783869 TACTAATCCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAATACA 27783810
Query 48470 ACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGT 48529
|| || || || ||||||||| || ||||| | || || ||| || |
Sbjct 27783809 GTGAACATTAAGTCCAATGCCACCTGCCGACTTTGATATCATTGCGCATTGTTCAACTGA 27783750
Query 48530 ATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTG 48589
| | |||| ||||| || |||| | ||| |||| |||||||| ||||| |||
Sbjct 27783749 TTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAAAGAAAACATGAAGACAATTG 27783690
Query 48590 CGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGA 48649
||| || || ||| | ||| | ||||| ||||||||| |||| | ||| ||
Sbjct 27783689 TGGACGATTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGA 27783630
Query 48650 TAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATAC 48709
|| ||| || || ||||||| ||||||| ||||| |||||||||||| | ||
Sbjct 27783629 TAGCAAATTGTAGGTTTCAACTGCAGAATCAATATCTTCGCCATGTATACCTATGGCGAC 27783570
Query 48710 ACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGA 48769
|||||||| || || || |||||||| | ||||| ||||||||| | | ||| ||
Sbjct 27783569 ACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAATACGA 27783510
Query 48770 TTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGA 48829
|| | ||| || || ||||| ||||| ||| || ||| ||||| ||||| |
Sbjct 27783509 CCGCTCAAGTGTCTTGAATCCAAAGTAGTTATATCCGAAATCGCGATCATATATAATAGC 27783450
Query 48830 TGAATTTA 48837
|| ||||
Sbjct 27783449 AGAGTTTA 27783442
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562086470227920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |