Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 499 3e-136 >seq2 Length=27840087 Score = 499 bits (552), Expect = 3e-136 Identities = 1226/1868 (66%), Gaps = 14/1868 (1%) Strand=Plus/Minus Query 46980 ACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTCTTT 47039 ||||| || | || | |||| ||||| |||||| || | ||||||||| || ||||| Sbjct 27785305 ACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTA 27785246 Query 47040 AAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAA 47099 | ||| ||||| ||| ||||| || |||||||| |||| | ||||| | Sbjct 27785245 AGACCCGCTTTCCATGAATAAAAATGGATTGACGTTAATTTTCCATAATTGGGTTCAGCT 27785186 Query 47100 ATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCT 47159 | ||||||||| | ||| ||||| ||||||||||| || ||||||||||| ||||| | | Sbjct 27785185 ACATGAATATTGAAAGACTGACTTTGATCAATAAACGCTCCTCTATCAGCCGCCATTTTT 27785126 Query 47160 AAAATAACCCTTTG--TGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTG 47217 | | | |||| || || ||||| || |||||||| | | ||| |||| | Sbjct 27785125 ATAGTTGA--TTTGACTGAAATTTCCCACACAGTTTTATACAAATCACGAATTTCTTTAG 27785068 Query 47218 GGA--GATT-AGTATTTTGAATAGATCCTCCgttttctataattttgttttttaattcat 47274 | | |||| | ||||||| || || || | || ||| |||| ||||| | || | Sbjct 27785067 GAATAGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCTCGT 27785008 Query 47275 ttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAATT 47334 ||| | | |||||||||| || | || | || || | ||||||| Sbjct 27785007 CATCCCACAAATCAAGTTCAGTTAAATCACGTAGTAAGTGGTGGTTCACTACCTGAAATT 27784948 Query 47335 CTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTAT 47394 | ||||| | |||| | | || || || ||||| || || | || ||||||| Sbjct 27784947 CGCCAGACAAAACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTAT 27784888 Query 47395 TTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTA 47454 | || || ||||| ||||| |||||||||||||||| || | | ||| |||||| | Sbjct 27784887 TGCCCAATATTTGCGCAGTGGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGA 27784828 Query 47455 CTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAA 47514 | || | || ||| ||||||||||||||||||| ||| Sbjct 27784827 CACCGTGTTGCGCTATAGATTTTTTAAGAGCATTCCAATCCCAAAGATCTGTTGGTGATT 27784768 Query 47515 CATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTAT 47574 ||||| | |||||| || | ||||||||| |||| ||| ||| ||| || | || Sbjct 27784767 TTTTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTGCCAACATAAGTCTCAT 27784708 Query 47575 AAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATATTGTTT 47634 | || || | | | ||| | |||||| || |||||||| || | ||| ||||| |||| Sbjct 27784707 ATGGTCCATCTCTCTGAGCTAATTCACAGCTGGCTTCCAAAGCTCCATAGTATATAGTTT 27784648 Query 47635 CAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGA--TTCAAAAGGATANNNNNNNNN 47692 | || || | |||| |||||| | || ||| | | ||| Sbjct 27784647 CGAAAATCTGCTGATTTAATAAAAATGCTTC--ACGACTTTCGTAGGAATACCGCATTAA 27784590 Query 47693 NNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGA 47752 |||| || || || ||||| || ||||||||||| || | ||| | ||| || Sbjct 27784589 TATTAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAATTTGA 27784530 Query 47753 AAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNN 47812 | ||||||||| || || || | |||||||| || |||||||||| Sbjct 27784529 TTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGT 27784470 Query 47813 NNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAAC---TTGTTATTTATAACAAA 47869 | |||| | | || ||||| ||| | || | | | ||||| Sbjct 27784469 AACGATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCACAAA 27784410 Query 47870 CCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTG 47929 | |||||||||| ||||| || | |||||| ||||||| |||| ||| | ||||| Sbjct 27784409 CATATTAAGTGCGATAGACGCCAAATTACACACAGCTATTTCATCTGGTGCCGAATATTC 27784350 Query 47930 TATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNN 47989 | |||||| | || ||||||| ||||| ||||| || | |||||| || || | Sbjct 27784349 AACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTT 27784290 Query 47990 NTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAAT 48049 ||||||| | |||||| | | ||| |||| || ||||| |||| ||||||||||| Sbjct 27784289 TCTGTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTCAAT 27784230 Query 48050 GATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTA 48109 ||| | ||||| || |||||| ||||| | ||| || |||| || Sbjct 27784229 GATGGCAAACCAAAGAGATTGAGCCTTAATAACTCGATTCGCTCGTCCCTCTCGTTCATA 27784170 Query 48110 TTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATT 48169 ||| |||| | || ||||| || || || | |||| | ||||| |||| || Sbjct 27784169 TTTGATATAGAGGTTTTCAAAATCTTCACCCCAAACATCTGGGAGGCCAGGGCATTTATG 27784110 Query 48170 AGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTAT 48229 |||||||| |||||||| || |||| | || || | ||||||| | ||| ||||| Sbjct 27784109 TGGACACATTAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATCAGGTAT 27784050 Query 48230 CCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAG 48289 ||| | || | ||| | ||| | | | | || || || ||| |||| ||||||| Sbjct 27784049 CCACAATGCAAAAAAAAGATCGCGTGCACGATGCTCCTCCTTTCCAGTATTTTTTTTAAG 27783990 Query 48290 TTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGG 48349 || | ||| || | | ||| | ||||| || || |||||||| || | | | || || Sbjct 27783989 GTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAAATATATAGCAAATGCTCCAGG 27783930 Query 48350 TCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGG 48409 || |||| ||| || ||||| | ||| | || ||| ||| | |||||||||||||| Sbjct 27783929 TCTTTTACCACCGCCCTGATCAACATAACGCGCGACATTATTAAATACTCTTAACATTGG 27783870 Query 48410 GACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT 48469 || | |||||||| | || || ||||| |||| | | || |||||| ||| Sbjct 27783869 TACTAATCCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAATACA 27783810 Query 48470 ACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGT 48529 || || || || ||||||||| || ||||| | || || ||| || | Sbjct 27783809 GTGAACATTAAGTCCAATGCCACCTGCCGACTTTGATATCATTGCGCATTGTTCAACTGA 27783750 Query 48530 ATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTG 48589 | | |||| ||||| || |||| | ||| |||| |||||||| ||||| ||| Sbjct 27783749 TTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAAAGAAAACATGAAGACAATTG 27783690 Query 48590 CGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGA 48649 ||| || || ||| | ||| | ||||| ||||||||| |||| | ||| || Sbjct 27783689 TGGACGATTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGA 27783630 Query 48650 TAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATAC 48709 || ||| || || ||||||| ||||||| ||||| |||||||||||| | || Sbjct 27783629 TAGCAAATTGTAGGTTTCAACTGCAGAATCAATATCTTCGCCATGTATACCTATGGCGAC 27783570 Query 48710 ACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGA 48769 |||||||| || || || |||||||| | ||||| ||||||||| | | ||| || Sbjct 27783569 ACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAATACGA 27783510 Query 48770 TTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGA 48829 || | ||| || || ||||| ||||| ||| || ||| ||||| ||||| | Sbjct 27783509 CCGCTCAAGTGTCTTGAATCCAAAGTAGTTATATCCGAAATCGCGATCATATATAATAGC 27783450 Query 48830 TGAATTTA 48837 || |||| Sbjct 27783449 AGAGTTTA 27783442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562086470227920