Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1 224 8e-53 seq518 113 4e-19 seq3 96.9 3e-14 >seq1 Length=29979347 Score = 224 bits (248), Expect = 8e-53 Identities = 413/597 (69%), Gaps = 10/597 (2%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | ||||| ||||| || || || || ||| || ||||| | || |||| || Sbjct 13817305 AGCTGTTGGTATTGATTTGGGCACAACCTACTCTTGCGTGGGTGTGTTCCAGCATGGCAA 13817246 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||||| || |||||||| ||||| ||||| | || || |||||||||||| | ||||| Sbjct 13817245 GGTTGAGATCATTGCCAACGATCAGGGTAATCGTACCACCCCATCTTATGTTGCCTTCAC 13817186 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTAC 550167 ||| || || | ||| ||||||| || || || | || |||| || || || || Sbjct 13817185 GGAGACGGAGCGTTTGATTGGTGACGCCGCCAAGAACCAGGTGGCCA-TG--AACCCAAC 13817129 Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227 | | ||||| || |||||||| ||| | ||||| | | || ||||| || | || || Sbjct 13817128 CCAAACTATCTTCGATGCTAAGCGTCTGATTGGTCGCAAATTCGATGATGCGGCCGTMCA 13817069 Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGA 550287 | | ||||||||||| ||||||||| | | ||||| ||| ||| || || | || || Sbjct 13817068 GTCTGATATGAAGCACTGGCCTTTCGAGGTCGTTAACGTTGATGGCAAGCCCAAGATCGA 13817009 Query 550288 AGCTACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTT 550346 | ||| | |||||| | || | ||| | || || | || || || ||||| | Sbjct 13817008 GGTTACGTA-CAAGGATGAGAAGAAGACTTTCTTCCCCGAGGAGATCTCCTCCATGGTGT 13816950 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTA 550405 | | || ||||| | || ||| | | | ||| ||||| ||||| |||| || Sbjct 13816949 TGACCAAGATGAAGGAGACCGCC-GAGGCGTACCTGGGCAAGACGGTTACCAATGCCGTC 13816891 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 || ||||| || || ||||| || || ||||| ||||| ||||| || |||||||| Sbjct 13816890 ATTACTGTGCCCGCCTATTTCAACGATTCACAGCGTCAGGCTACCAAGGATGCTGGCACC 13816831 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 || || || | || || | |||||||||||||| || |||||||| || | || ||| Sbjct 13816830 ATCGCCGGTTTGAACGTATTGCGTATTATCAATGAGCCGACTGCTGCGGCCATCGCTTAT 13816771 Query 550526 GGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGGT 550582 || || || || | || | |||| |||||| | || || |||| || ||| Sbjct 13816770 GGCCTGGACAAGAAGGCTGTTGGTGAACGTAATGTGTTGATTTTCGATTTGGGCGGT 13816714 Score = 96.9 bits (106), Expect = 3e-14 Identities = 272/411 (66%), Gaps = 10/411 (2%) Strand=Plus/Minus Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 ||||| | || ||||| ||||||||||||||| | | || ||||| || | ||| Sbjct 6720594 AATACAGTATTCGATGCGAAACGTTTAATTGGACGCAAATTCGATGATAAGAAGATACAG 6720535 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 | || ||||||||||||| ||| | | | || | || || ||| | |||||| Sbjct 6720534 GAGGACTTGAAGCATTGGCCATTCAAGGTCATCAACGACGGGGGCAAGCCTAAAATTGAA 6720475 Query 550289 G-CTACTCATGAAGG---ATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGT 550344 | | | | | |||| | | || | ||| |||| ||| | || || ||||| Sbjct 6720474 GTCGAAT--TTAAGGGCGAACGC--AAGCGTTTTGCACCCGAAGAGATCAGCTCCATGGT 6720419 Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGG-TCAAGAAGTTACGGATGCAG 550403 || | ||| ||| |||| ||| | | | | || || | | || | |||||| | Sbjct 6720418 GTTGACGAAGATGCGGGAAACTGCCGAGGTCTATCTGGGCTCCA-AGGTAAAGGATGCTG 6720360 Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463 | || || || || || || || || || || || || ||||| |||||||||||||| Sbjct 6720359 TCATTACGGTGCCGGCGTACTTCAACGATTCCCAGCGCCAAGCGACTAAAGATGCTGGCT 6720300 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523 || || || | ||||| || || || |||||||| || || || ||||| || || | Sbjct 6720299 CCATAGCCGGTTTGAATGTGCTGCGCATCATCAATGAGCCGACGGCGGCTGCCCTCGCCT 6720240 Query 550524 ATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT 550574 |||| || || ||| || | ||| | ||||| || ||||| |||| Sbjct 6720239 ATGGCCTGGACAAAAATCTGAAGGGAGAGCGAAATGTGCTGATCTTCGATT 6720189 Score = 96.9 bits (106), Expect = 3e-14 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || ||||| ||| | || ||||| || || || ||||||||||| || |||| Sbjct 6721256 GCAATTGGTATCGATCTGGGCACCACCTACTCCTGCGTGGGTGTTTGGCAGAACAATAAA 6721197 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||| |||||||||||||||||||| || | || || || || ||||| | || | Sbjct 6721196 GTTGAGATTATTGCCAATGATCAAGGCAATCGGACGACGCCCTCGTATGTGGCCTTTAAC 6721137 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA 550149 || || || | || |||| |||||||| ||| |||| Sbjct 6721136 GACACAGAGCGCCTAATTGGCGATGCAGCTAAAAATCA 6721099 >seq518 Length=3401 Score = 113 bits (124), Expect = 4e-19 Identities = 129/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 930657 GTATTAATTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGT 930716 |||||| |||| |||||||| ||||| || || ||| |||||||| |||| ||||| ||| Sbjct 3070 GTATTAGTTGACTTTTCTTCTCCAAACATCGCAAAACAAATGCATGTTGGTCATTTACGT 3129 Query 930717 TCTACCATTATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAG-TAAAGTTCA 930775 || ||||| ||||| || || | ||||| | ||||| || | || | | ||| Sbjct 3130 TCCACCATAATTGGCGAGTCAATCTGTAGGCTTCTTGAAT-TTCTACAACATGACGTTAT 3188 Query 930776 TCGAGTCAATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 930826 ||| |||||||| |||| ||||||||||| || ||||| ||| | || || Sbjct 3189 TCGCATCAATCATCTTGGGGATTGGGGAACGCAGTTTGGCATGCTCATAGC 3239 >seq3 Length=22052390 Score = 96.9 bits (106), Expect = 3e-14 Identities = 158/223 (71%), Gaps = 10/223 (4%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| || ||||||||||| ||| | ||| |||||||| |||| | || | Sbjct 1975162 AGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGG--ATATTGTAGTCAGACAAGGTGC 1975105 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 |||||| ||||| || ||||| || || || | |||||||| || |||||||| | Sbjct 1975104 GGCCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATTCCCT 1975045 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC---AGTGTGAGTACATTCGA 563431 | ||||||||||| || || || |||||| ||||| || | | || | | | Sbjct 1975044 CCTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCA--ACCTCCAA 1974987 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | || || || || | |||||||||||| || ||||| Sbjct 1974986 G-GTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCAT 1974945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029127933027220