Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq1 224 8e-53
seq518 113 4e-19
seq3 96.9 3e-14
>seq1
Length=29979347
Score = 224 bits (248), Expect = 8e-53
Identities = 413/597 (69%), Gaps = 10/597 (2%)
Strand=Plus/Minus
Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050
|||| | ||||| ||||| || || || || ||| || ||||| | || |||| ||
Sbjct 13817305 AGCTGTTGGTATTGATTTGGGCACAACCTACTCTTGCGTGGGTGTGTTCCAGCATGGCAA 13817246
Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110
||||| || |||||||| ||||| ||||| | || || |||||||||||| | |||||
Sbjct 13817245 GGTTGAGATCATTGCCAACGATCAGGGTAATCGTACCACCCCATCTTATGTTGCCTTCAC 13817186
Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTAC 550167
||| || || | ||| ||||||| || || || | || |||| || || || ||
Sbjct 13817185 GGAGACGGAGCGTTTGATTGGTGACGCCGCCAAGAACCAGGTGGCCA-TG--AACCCAAC 13817129
Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227
| | ||||| || |||||||| ||| | ||||| | | || ||||| || | || ||
Sbjct 13817128 CCAAACTATCTTCGATGCTAAGCGTCTGATTGGTCGCAAATTCGATGATGCGGCCGTMCA 13817069
Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGA 550287
| | ||||||||||| ||||||||| | | ||||| ||| ||| || || | || ||
Sbjct 13817068 GTCTGATATGAAGCACTGGCCTTTCGAGGTCGTTAACGTTGATGGCAAGCCCAAGATCGA 13817009
Query 550288 AGCTACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTT 550346
| ||| | |||||| | || | ||| | || || | || || || ||||| |
Sbjct 13817008 GGTTACGTA-CAAGGATGAGAAGAAGACTTTCTTCCCCGAGGAGATCTCCTCCATGGTGT 13816950
Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTA 550405
| | || ||||| | || ||| | | | ||| ||||| ||||| |||| ||
Sbjct 13816949 TGACCAAGATGAAGGAGACCGCC-GAGGCGTACCTGGGCAAGACGGTTACCAATGCCGTC 13816891
Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465
|| ||||| || || ||||| || || ||||| ||||| ||||| || ||||||||
Sbjct 13816890 ATTACTGTGCCCGCCTATTTCAACGATTCACAGCGTCAGGCTACCAAGGATGCTGGCACC 13816831
Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525
|| || || | || || | |||||||||||||| || |||||||| || | || |||
Sbjct 13816830 ATCGCCGGTTTGAACGTATTGCGTATTATCAATGAGCCGACTGCTGCGGCCATCGCTTAT 13816771
Query 550526 GGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGGT 550582
|| || || || | || | |||| |||||| | || || |||| || |||
Sbjct 13816770 GGCCTGGACAAGAAGGCTGTTGGTGAACGTAATGTGTTGATTTTCGATTTGGGCGGT 13816714
Score = 96.9 bits (106), Expect = 3e-14
Identities = 272/411 (66%), Gaps = 10/411 (2%)
Strand=Plus/Minus
Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228
||||| | || ||||| ||||||||||||||| | | || ||||| || | |||
Sbjct 6720594 AATACAGTATTCGATGCGAAACGTTTAATTGGACGCAAATTCGATGATAAGAAGATACAG 6720535
Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288
| || ||||||||||||| ||| | | | || | || || ||| | ||||||
Sbjct 6720534 GAGGACTTGAAGCATTGGCCATTCAAGGTCATCAACGACGGGGGCAAGCCTAAAATTGAA 6720475
Query 550289 G-CTACTCATGAAGG---ATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGT 550344
| | | | | |||| | | || | ||| |||| ||| | || || |||||
Sbjct 6720474 GTCGAAT--TTAAGGGCGAACGC--AAGCGTTTTGCACCCGAAGAGATCAGCTCCATGGT 6720419
Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGG-TCAAGAAGTTACGGATGCAG 550403
|| | ||| ||| |||| ||| | | | | || || | | || | |||||| |
Sbjct 6720418 GTTGACGAAGATGCGGGAAACTGCCGAGGTCTATCTGGGCTCCA-AGGTAAAGGATGCTG 6720360
Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463
| || || || || || || || || || || || || ||||| ||||||||||||||
Sbjct 6720359 TCATTACGGTGCCGGCGTACTTCAACGATTCCCAGCGCCAAGCGACTAAAGATGCTGGCT 6720300
Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523
|| || || | ||||| || || || |||||||| || || || ||||| || || |
Sbjct 6720299 CCATAGCCGGTTTGAATGTGCTGCGCATCATCAATGAGCCGACGGCGGCTGCCCTCGCCT 6720240
Query 550524 ATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT 550574
|||| || || ||| || | ||| | ||||| || ||||| ||||
Sbjct 6720239 ATGGCCTGGACAAAAATCTGAAGGGAGAGCGAAATGTGCTGATCTTCGATT 6720189
Score = 96.9 bits (106), Expect = 3e-14
Identities = 116/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051
|| || ||||| ||| | || ||||| || || || ||||||||||| || ||||
Sbjct 6721256 GCAATTGGTATCGATCTGGGCACCACCTACTCCTGCGTGGGTGTTTGGCAGAACAATAAA 6721197
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
||||| |||||||||||||||||||| || | || || || || ||||| | || |
Sbjct 6721196 GTTGAGATTATTGCCAATGATCAAGGCAATCGGACGACGCCCTCGTATGTGGCCTTTAAC 6721137
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA 550149
|| || || | || |||| |||||||| ||| ||||
Sbjct 6721136 GACACAGAGCGCCTAATTGGCGATGCAGCTAAAAATCA 6721099
>seq518
Length=3401
Score = 113 bits (124), Expect = 4e-19
Identities = 129/171 (75%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 930657 GTATTAATTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGT 930716
|||||| |||| |||||||| ||||| || || ||| |||||||| |||| ||||| |||
Sbjct 3070 GTATTAGTTGACTTTTCTTCTCCAAACATCGCAAAACAAATGCATGTTGGTCATTTACGT 3129
Query 930717 TCTACCATTATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAG-TAAAGTTCA 930775
|| ||||| ||||| || || | ||||| | ||||| || | || | | |||
Sbjct 3130 TCCACCATAATTGGCGAGTCAATCTGTAGGCTTCTTGAAT-TTCTACAACATGACGTTAT 3188
Query 930776 TCGAGTCAATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 930826
||| |||||||| |||| ||||||||||| || ||||| ||| | || ||
Sbjct 3189 TCGCATCAATCATCTTGGGGATTGGGGAACGCAGTTTGGCATGCTCATAGC 3239
>seq3
Length=22052390
Score = 96.9 bits (106), Expect = 3e-14
Identities = 158/223 (71%), Gaps = 10/223 (4%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314
|||||||| || ||||||||||| ||| | ||| |||||||| |||| | || |
Sbjct 1975162 AGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGG--ATATTGTAGTCAGACAAGGTGC 1975105
Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374
|||||| ||||| || ||||| || || || | |||||||| || |||||||| |
Sbjct 1975104 GGCCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATTCCCT 1975045
Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC---AGTGTGAGTACATTCGA 563431
| ||||||||||| || || || |||||| ||||| || | | || | | |
Sbjct 1975044 CCTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCA--ACCTCCAA 1974987
Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| || | || || || || | |||||||||||| || |||||
Sbjct 1974986 G-GTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCAT 1974945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029127933027220
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |