Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2 140 3e-28 seq4 138 9e-28 seq3 107 2e-18 >seq2 Length=27840087 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || | ||| || |||||||| || ||||| |||| | ||| | |||| ||| Sbjct 14207464 ACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCC 14207523 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| || ||||| || | |||||| ||||| || ||||| |||||||| || || Sbjct 14207524 AATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGG 14207583 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| | || | || || |||| ||| || |||||||||| || || Sbjct 14207584 ATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTA 14207643 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || |||| ||||| ||||| |||||||| || Sbjct 14207644 CCCGTTAGGGTTTTAACAAAGATCTGCATTGT 14207675 >seq4 Length=23952536 Score = 138 bits (152), Expect = 9e-28 Identities = 201/282 (71%), Gaps = 4/282 (1%) Strand=Plus/Minus Query 13655 AATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGCTCC 13714 || ||||| || || |||| | | ||||| | || || |||||| | || | |||||| Sbjct 633398 AACTTTCGCTTGCAGCCTTGATAGTTCATATAGCGAATCTTACCAAATATCGCGCGCTCC 633339 Query 13715 ATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTGGGA 13774 |||| | | |||||| | || | || |||||||||||||| | || || || ||| Sbjct 633338 TTCCAACCTTGGTCGTGAATCCCACCGATGGACCACATGCAACCAACGTAGCCATTCGGA 633279 Query 13775 TCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCACTGT- 13833 || |||||||||| |||||| |||||||| || ||||| | | | |||| |||| Sbjct 633278 TCACGTCCATCCAGACTGTACTTGTCGTTCAATAATATG--CTATACTCAAGCGCCTGTT 633221 Query 13834 -AGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGTGCA 13892 |||| | ||| ||||| || ||||| |||||||| || | || | | ||||||| Sbjct 633220 CCGGCGTTTCGGTCCACTCTAAAATCTTTTTGGCCCAATACATGCGCAGAAACCCGTGCA 633161 Query 13893 TTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACA 13934 ||||||||| | | ||||| ||| || | |||||||| Sbjct 633160 TTTTGCCTTCCTTGACCAGCTGCAGCTGGGCCGAGTTCCACA 633119 >seq3 Length=22052390 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||| || || || || |||||||| || | | || | | |||| |||| ||| Sbjct 1975148 ATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAGGTGCGGCCATCTTCCAGTTG 1975089 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || |||| |||||| ||||| || ||||| || || ||||||||||| || Sbjct 1975088 CTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATTCCCTCCTTATCTTGAATCTT 1975029 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || | || | || || || | || || || | |||| || || || || Sbjct 1975028 GGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAGGTGATGGTCTTTCCCGT 1974969 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 |||||||| || || |||||||| Sbjct 1974968 CAAAGTTTTAACGAAGATCTGCAT 1974945 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || |||||||||||||| || ||||| || |||||||||| | || | |||| ||| Sbjct 1975441 ACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAGGGTGCGACCATCTTCC 1975382 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| || || || |||| |||||| ||||| || ||||| ||||| || || ||| Sbjct 1975381 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGA 1975322 Query 101381 ATTTT 101385 || || Sbjct 1975321 ATCTT 1975317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396263051394546