Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4 102 2e-16 >seq4 Length=23952536 Score = 102 bits (112), Expect = 2e-16 Identities = 347/528 (66%), Gaps = 12/528 (2%) Strand=Plus/Minus Query 25506 CTCAAACTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGT-ACGCTC 25564 |||| |||||| | |||||| | ||||| | || ||| || || |||| ||| | Sbjct 3358977 CTCATTCTGGACTGTGGAAGAGGTGGATCTCTCTAAAGACTTGACCGACTGGGCACGTT- 3358919 Query 25565 TATCCAAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATG 25624 || | | |||||| || ||| || | ||| | || |||||||| ||||| |||| Sbjct 3358918 TAACTGATAACGAGCGTCACTTTATCTCCCATGTGCTCGCCTTCTTTGCCGCCTCCGATG 3358859 Query 25625 GTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCA 25684 | || || || |||||||| |||| | |||| | ||| ||||| || || Sbjct 3358858 GCATTGTTAATGAGAATCTTGTCGAGCGCTTCAGCCAGGAGGTGCAAATAACCGAAGCTC 3358799 Query 25685 AGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGC 25744 |||||||| || || || || ||||| || ||||||||||| ||| |||| | || Sbjct 3358798 GTTGTTTCTATGGCTTTCAAATCGCCATGGAGAATGTGCACTCGGAGATGTACAGCGTGC 3358739 Query 25745 TTCT-GATGACGTACATTACAGACGTCGCC--GAGAGAGATCGGCTGTTTGGTGCCATCG 25801 | | ||| || || |||| || || | || | ||| ||||| |||||| | Sbjct 3358738 TGATCGAT-ACATATATTAGGGA--TCCACAGGAACGGGATTATCTGTTCAATGCCATTG 3358682 Query 25802 AGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGA 25861 | || ||| ||||| | ||||| ||||| | ||||| || | | Sbjct 3358681 AAACAATGCCCGCTGTCAAGCGAAAGGCCGATTGGGCGCTCTCTTGGAT-TTCATCGAAG 3358623 Query 25862 GC-GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGC 25920 || || | ||||||||| | | | || || ||||| |||||||| ||||| || || Sbjct 3358622 GCGGCGAACTTTGGCGAGAGAATCATTGCGTTCGCTGCCGTGGAGGGAATCTTCTTTAGT 3358563 Query 25921 GGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTT 25979 || ||||| | ||||| ||||| ||| | | | || | |||||||| ||| ||| Sbjct 3358562 GGCAGCTTTGCCTCGATCTTTTGGCTGAAG-AAACGTGGTCTGATGCCCGGTCTGACCTT 3358504 Query 25980 TTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGC 26027 ||||| ||| | ||| | |||||||| | || | || ||||| Sbjct 3358503 CTCCAATGAGTTGATCTCACGCGACGAGGGCTTGCATTGTGACTTTGC 3358456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928807901640320