Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1 205 6e-47 seq3 96.9 2e-14 seq2 96.9 2e-14 seq6 86.0 4e-11 >seq1 Length=29979347 Score = 205 bits (226), Expect = 6e-47 Identities = 405/591 (69%), Gaps = 8/591 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| ||| || | ||| | || |||| || || | Sbjct 13817300 TTGGTATTGATTTGGGCACAACCTACTCTTGCGTGGGTGTGTTCCAGCATGGCAAGGTTG 13817241 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || |||||||| || || |||||| | || || ||||| |||||| | || || || | Sbjct 13817240 AGATCATTGCCAACGATCAGGGTAATCGTACCACCCCATCTTATGTTGCCTTCACGGAGA 13817181 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | | | ||||| || || || || | || | || || || | |||| Sbjct 13817180 CGGAGCGTTTGATTGGTGACGCCGCCAAGAACCAGGTGGCCATGAACCCAACCCAAACTA 13817121 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || |||||||| | |||||||||| || || |||||| | | || || ||||||| Sbjct 13817120 TCTTCGATGCTAAGCGTCTGATTGGTCGCAAATTCGATGATGCGGCCGTMCAGTCTGATA 13817061 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630 || || |||||||| |||| | || |||| ||| || || | || || | | | Sbjct 13817060 TGAAGCACTGGCCTTTCGAGGTCGTTAACGTTGATGGCAAGCCCAAGATCGAGGTTACGT 13817001 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || | || || || ||||| || |||| Sbjct 13817000 ACAAGGATGAG-AAGAAGACTTTCTTC-CCCGAGGAGATCTCCTCCATGGTGTTGACCAA 13816943 Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 ||||| | |||| |||| | || | ||| ||||| || || |||| || |||||| Sbjct 13816942 GATGAAGGAGACCGCCGAG-GCGTA-CCTGGGCAAGACGGTTACCAATGCCGTCATTACT 13816885 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || ||||| || ||||| || ||||| || || || ||||| || | || || Sbjct 13816884 GTGCCCGCCTATTTCAACGATTCACAGCGTCAGGCTACCAAGGATGCTGGCACCATCGCC 13816825 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||| | || || || |||||||| ||||| || || || || || | |||||||| || Sbjct 13816824 GGTTTGAACGTATTGCGTATTATCAATGAGCCGACTGCTGCGGCCATCGCTTATGGCCTG 13816765 Query 474869 GATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGGT 474919 || ||||| ||| ||| ||||| || || || |||| || ||| Sbjct 13816764 GACAAGAAGGCTGTTGGTGAACGTAATGTGTTGATTTTCGATTTGGGCGGT 13816714 Score = 125 bits (138), Expect = 5e-23 Identities = 386/590 (65%), Gaps = 16/590 (3%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||||||||||||||| || ||||| || ||| ||||| | ||||| || | || || Sbjct 5776207 TGCAATTGGTATTGACTTGGGAACCACCTACTCCTGTGTTGGTGTTTTCCAGCACGGCAA 5776266 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || || ||||| ||||| ||||| || || | || || || || || | ||||| Sbjct 5776267 GGTGGAGATAATAGCCAACGACCAGGGCAACCGCACCACGCCCAGCTAYGTGGCATTTAC 5776326 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || | || | |||||||| || || || | |||| || ||||| ||| Sbjct 5776327 CGACTCGGAGAGGTTGATTGGAGACGCGGCCAAGAACCAAGTGGCCATGAATCCAAGTAA 5776386 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 ||| | || ||||| || | |||||||| ||||| | ||||||| | | | || Sbjct 5776387 CACTGTATTCGATGCGAAGCGTTTGATTGGACGTAAATATGATGATCCGAAGATTCAGGG 5776446 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG- 474626 || ||| || ||||| || || ||| | || | | || |||||| | ||| | | Sbjct 5776447 CGACATGAAGCACTGGCCATTCAAAGTGGTCAACGACTGCGGCAAACCAAAGATAAATGT 5776506 Query 474627 -CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | | || ||| ||| || | ||| | ||||| | || || |||||| | Sbjct 5776507 CGAGTTCA--AAGGCGAACAGAAGCGCTTTGCGCCGGAGGAGATCAGCTCGATGGTTCTG 5776564 Query 474686 GCCAAAATGAAACAAACCGC--GAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTA 474742 | || ||||| | || || |||| | ||||| || | | | || || || Sbjct 5776565 GTAAAGATGAAGGAGACGGCCGAAGCTTA---CTTGGGCACCACCATCAGAGACGCCGTC 5776621 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 || ||||| || || || || ||||| || || ||||||||||| ||||| || || Sbjct 5776622 ATCACTGTGCCTGCCTACTTCAATGACTCGCAGCGTCAAGCAACCAAAGACGCCGGTGCC 5776681 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 || || || || || || | || || || ||||| || || ||||| || || || ||| Sbjct 5776682 ATCGCCGGGCTGAACGTGCTGCGCATCATCAATGAGCCCACTGCAGCAGCTCTGGCCTAT 5776741 Query 474863 GGTCTTGATAAGAATTCTGACAAA---GAAGTAAATGTTTTAATCTTTGA 474909 || | || ||||| ||| |||| ||| |||||| |||| || || Sbjct 5776742 GGCTTGGACAAGAA-TCT--CAAAGGCGAACGCAATGTTCTAATATTCGA 5776788 Score = 100 bits (110), Expect = 2e-15 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||||||||||| ||| | || || || ||| || || | ||||||||| || |||| Sbjct 6721256 GCAATTGGTATCGATCTGGGCACCACCTACTCCTGCGTGGGTGTTTGGCAGAACAATAAA 6721197 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || ||||||||||| ||||| ||| | || || || || ||||| | |||| Sbjct 6721196 GTTGAGATTATTGCCAATGATCAAGGCAATCGGACGACGCCCTCGTATGTGGCCTTTAAC 6721137 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCA 474486 || || || | || ||||| ||||| |||||| |||| Sbjct 6721136 GACACAGAGCGCCTAATTGGCGATGCAGCTAAAAATCA 6721099 Score = 96.9 bits (106), Expect = 2e-14 Identities = 274/412 (67%), Gaps = 12/412 (3%) Strand=Plus/Minus Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 ||||| | || ||||| ||| | || ||||| || || || ||||||| | | || Sbjct 6720594 AATACAGTATTCGATGCGAAACGTTTAATTGGACGCAAATTCGATGATAAGAAGATACAG 6720535 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA 474625 || || |||||||| || ||||| || || | || || || || | || ||| Sbjct 6720534 GAGGACTTGAAGCATTGGCCATTCAAGGTCATCAACGACGGGGGCAAGCCTAAAATTGAA 6720475 Query 474626 GC--AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 | ||| | | || ||| || | ||| |||| ||| | || || ||||| | Sbjct 6720474 GTCGAATTTAAG--GGCGAACGCAAGCGTTTTGCACCCGAAGAGATCAGCTCCATGGTGT 6720417 Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGA--CAAGAAGTAACTGATGCAG 474740 | | || ||| |||| || ||| || ||||| || |||| |||| ||||| | Sbjct 6720416 TGACGAAGATGCGGGAAACTGCCGAGGTC-TATCTGGGCTCCAAG--GTAAAGGATGCTG 6720360 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | ||||| || || || || || || ||||| || || ||||| ||||||||||| || Sbjct 6720359 TCATTACGGTGCCGGCGTACTTCAACGATTCCCAGCGCCAAGCGACTAAAGATGCTGGCT 6720300 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 || || ||| | ||||| | || || || ||||| || || || || || || || | Sbjct 6720299 CCATAGCCGGTTTGAATGTGCTGCGCATCATCAATGAGCCGACGGCGGCTGCCCTCGCCT 6720240 Query 474861 ATGGTCTTGATAAGAATTCTG-ACAAAGAAGTAAATGTTTTAATCTTTGATT 474911 |||| || || || || |||| | ||| |||||| | ||||| |||| Sbjct 6720239 ATGGCCTGGACAA-AAATCTGAAGGGAGAGCGAAATGTGCTGATCTTCGATT 6720189 >seq3 Length=22052390 Score = 96.9 bits (106), Expect = 2e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || |||||||| || || || | ||| || |||| | || Sbjct 1975166 ACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAGGT 1975107 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| |||||||| || || || || ||||| || ||||| || |||||||| Sbjct 1975106 GCGGCCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATTCC 1975047 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||| ||||||||||| ||||| ||||| ||||| | | | || | ||| Sbjct 1975046 CTCCTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAA 1974987 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || || | ||| |||||||| || || Sbjct 1974986 -GGTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTG 1974948 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| ||||| | |||||| ||| || || || || ||||| | || || Sbjct 1975454 ACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAGGGT 1975395 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| |||||||| || || || || ||||| || ||||| || ||||| || Sbjct 1975394 GCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATACC 1975335 Query 480671 TTCCTTGTCTTGAATCTT 480688 ||||||||| |||||||| Sbjct 1975334 TTCCTTGTCCTGAATCTT 1975317 >seq2 Length=27840087 Score = 96.9 bits (106), Expect = 2e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | |||||| |||||||| || ||||| || ||||| |||||||||||||| || Sbjct 14207517 ATCTTCCAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTT 14207576 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| ||||||| || || ||||| | || ||||| || || Sbjct 14207577 GTCCTGGATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGAT 14207636 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || || ||||| || || || Sbjct 14207637 GGTCTTACCCGTTAGGGTTTTAACAAAGATCTG 14207669 Score = 86.0 bits (94), Expect = 4e-11 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || ||||| || || || || ||||| || ||||| || || ||||| || || Sbjct 185526 ATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCTTT 185467 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAAGGGTAA 480735 |||||| ||||| |||||| || || || |||| | | | | | ||| | ||| Sbjct 185466 GTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAAG-TAA 185408 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || ||||||||||| |||||||| ||||| Sbjct 185407 TGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTG 185374 >seq6 Length=26536676 Score = 86.0 bits (94), Expect = 4e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || |||||||| || || || | || || || | ||||| Sbjct 9462227 ACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTRTAGTCGGACAGAGT 9462286 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || || ||||| ||||| || || ||||| || ||||| || ||||| || Sbjct 9462287 GCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACC 9462346 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAA 480729 ||||||||||| ||||| || ||| |||||| || || | | | | || | ||| Sbjct 9462347 CTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTGTCCGAGGGCTCAACCTCCAA 9462406 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || | |||||| ||||| || || Sbjct 9462407 -AGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTG 9462445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268042880160344