Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq2 150 9e-32 >seq2 Length=27840087 Score = 150 bits (166), Expect = 9e-32 Identities = 317/473 (67%), Gaps = 0/473 (0%) Strand=Plus/Minus Query 25887 TATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTG 25946 ||| |||||| | ||| ||| || |||| ||||| | |||||| | ||| | Sbjct 27784113 TATGTGGACACATTAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATCAG 27784054 Query 25947 GAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTT 26006 | ||||||| |||| |||| | ||| | || | || || ||||| ||| |||| Sbjct 27784053 GTATCCACAATGCAAAAAAAAGATCGCGTGCACGATGCTCCTCCTTTCCAGTATTTTTTT 27783994 Query 26007 TTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTAC 26066 | || || || || || || | |||||||||||| || || ||||| |||||||| | Sbjct 27783993 TAAGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAAATATATAGCAAATGCTC 27783934 Query 26067 CTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACA 26126 | |||||| || || || ||||| || || | || | ||| || ||| | |||| Sbjct 27783933 CAGGTCTTTTACCACCGCCCTGATCAACATAACGCGCGACATTATTAAATACTCTTAACA 27783874 Query 26127 TTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAA 26186 |||| ||||||||| ||||| ||||| || | | ||| || ||| | | || || Sbjct 27783873 TTGGTACTAATCCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAA 27783814 Query 26187 TATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAA 26246 || |||| ||| || || || ||||| ||| | ||||| || ||| || | | || Sbjct 27783813 TACAGTGAACATTAAGTCCAATGCCACCTGCCGACTTTGATATCATTGCGCATTGTTCAA 27783754 Query 26247 CTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATA 26306 ||| | ||||| |||| || |||| || ||| | |||||| ||||| | Sbjct 27783753 CTGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAAAGAAAACATGAAGACA 27783694 Query 26307 ATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAA 26359 |||| | | || |||| ||| | ||| | || |||| ||||||||| || Sbjct 27783693 ATTGTGGACGATTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAA 27783641 Score = 84.2 bits (92), Expect = 1e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 25015 AAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTC 25074 |||||| ||||||||||||| |||| | | | ||||||||| | || || || | || Sbjct 27784952 AAATTCGCCAGACAAAACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTC 27784893 Query 25075 ATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATT 25134 |||||| || || ||||| | ||| |||||||| ||||| || || | || ||||| Sbjct 27784892 ATTATTGCCCAATATTTGCGCAGTGGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATT 27784833 Query 25135 TCTCAAACC 25143 ||| | ||| Sbjct 27784832 TCTGACACC 27784824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253030199286350