Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq2 84.2 3e-11 >seq2 Length=27840087 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 48075 ACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTT 48134 |||||| || |||||||| ||||| ||||| || ||||||| ||||| ||||| Sbjct 1517000 ACCATAGGGCGAACGTGGGTAGAAGGGTGTCTGTTCATTCTGTGGCGTCTCCACAACCTT 1516941 Query 48135 ACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCAAGCAA 48194 || || || || ||||| ||||| |||| |||||| | | ||||| || Sbjct 1516940 GCCGTACAGCTCTGACGTGGACGCTTGGTAGAATCGAACCGTTTTCTCCATTCCACATGT 1516881 Query 48195 ACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGG 48254 || | ||| || || | | ||| ||||| | ||||| || | ||||| ||| Sbjct 1516880 CCGTATTGCATCCAGTATGCGCAGTGTGCCAACTGCATCCACCTCTGCCGTATATTCGCT 1516821 Query 48255 CATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTC 48305 || || || || || || ||||| |||||| | |||||||||||||| Sbjct 1516820 CAAATCGAAAGAGACTTTCACATGCGACTGTGCAGCCAGATTATAAATCTC 1516770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665467963234960