Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq2 138 2e-27
seq3 100 6e-16
>seq2
Length=27840087
Score = 138 bits (152), Expect = 2e-27
Identities = 168/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | ||| || | || || || || || | |||||| ||| || || || ||
Sbjct 14207445 ACCACCACGAAGGCGGAGCACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGA 14207504
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
| || || |||| |||||||| || ||||||||||||| | ||| ||||| || ||
Sbjct 14207505 AAGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGG 14207564
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
||||||||||| || || || || ||| ||||| || | ||| |||| ||| ||
Sbjct 14207565 AATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGAC 14207624
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| ||||| ||||| ||||| |||| ||||||| ||| |||||||||
Sbjct 14207625 CTCAAGAGTGATGGTCTTACCCGTTAGGGTTTTAACAAAGATCTGCATT 14207673
>seq3
Length=22052390
Score = 100 bits (110), Expect = 6e-16
Identities = 162/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | ||||| | || | ||| | || | ||| || |||||| || |||
Sbjct 1975174 ATACCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCA 1975115
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| || || || |||| |||| ||| || || || ||||| | | ||| ||||| |||
Sbjct 1975114 GACAAGGTGCGGCCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGT 1975055
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| ||||| || |||||||| || || || || || || | ||| || | ||
Sbjct 1975054 GGAATTCCCTCCTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCA 1974995
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| || | || ||||| || || || || ||||||| || |||||||||||
Sbjct 1974994 ACCTCCAAGGTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCATTTT 1974942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984439913820300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |