Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq2 143 8e-29
seq6 98.7 3e-15
seq1 95.1 4e-14
>seq2
Length=27840087
Score = 143 bits (158), Expect = 8e-29
Identities = 615/955 (64%), Gaps = 23/955 (2%)
Strand=Plus/Minus
Query 155400 AATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAA--TTGCTCC 155457
|||| ||| || || || || ||||||||||| | || || || | |||| ||| |
Sbjct 27784585 AATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGAC-GTAAATTTGAT-- 27784529
Query 155458 TGCTTGTCTTCTTG-TTTGGGTAAAAATTCACATCAATAATGTTATTTAAATTT---GTA 155513
| || ||||| | ||||| |||| | |||||| || |||||||| ||| |||
Sbjct 27784528 TTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGTA 27784469
Query 155514 ACCAATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACA 155573
|| | | || ||||| ||| | || | ||||| | | ||| |||| | |||
Sbjct 27784468 ACGATT---TTAGTTACTTCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCACA 27784412
Query 155574 AACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTA 155632
|||||| ||| | |||||||||| |||||| || || | || | || | || ||
Sbjct 27784411 AACATATTAAGTGCGATAGACGCCAAATTACACACAGCTATTTCATCTGGTGCCG-AATA 27784353
Query 155633 TTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGA 155692
||| || || || |||||| ||| | || || || || | ||| | |||||
Sbjct 27784352 TTCAACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCT 27784293
Query 155693 TTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTC 155752
||| |||||||||| ||||| ||| ||||| || || || ||||| | || | ||
Sbjct 27784292 TTTTCTGTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTC 27784233
Query 155753 CAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTG-TTGTATCTGCCTTCCGACT 155811
| || | ||| || | || |||| | || | || || || || |
Sbjct 27784232 AATGATGGCAAACCAAAGAGATTGAGCCTTAA-TAACTCGATTCGCTCGTCCCTCTCGTT 27784174
Query 155812 CATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACT 155871
||||||| ||||| || || |||| ||||| || ||| || |||||||| |
Sbjct 27784173 CATATTTGATATAGAGGTTTTCAAAATCTTCACCCCAAACATCTGGGAGGCCAGGGCATT 27784114
Query 155872 TATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCAC 155931
||| || || | | ||||| || |||| | ||||| | |||||| | ||||
Sbjct 27784113 TATGTGGACACATTAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATCAG 27784054
Query 155932 TCGCCCAAATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCCGTGATTCTTC 155990
||| | ||| | ||||| || | ||| | || |||||| | || ||| ||
Sbjct 27784053 GTATCCACAATGCAAAAAAAAGATCGCGTGCACGATG-CTCCTCCTTTCCAGTATTTTTT 27783995
Query 155991 CGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTA 156050
|| || || ||||| | ||| | || ||||||| ||| ||||||||
Sbjct 27783994 TTAAGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAAATATATAGCAAATGCT 27783935
Query 156051 CCATTCCTCTTGCCA---CCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGC 156107
||| || || ||| |||||||| ||||| || || ||||| || || | || |
Sbjct 27783934 CCAGGTCTTTTACCACCGCCCTGATCAACATAACGCGCGACATTATTAAATACTCTTAAC 27783875
Query 156108 ATAGG-AATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCG 156166
|| || | |||| ||||| |||||||| || ||||| | ||| | || | ||
Sbjct 27783874 ATTGGTACTAAT-CCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCG 27783816
Query 156167 AACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTT 156226
|| | |||| || |||||||| ||||||| | | || || || ||||||| |
Sbjct 27783815 AATACAGTGAACATTAAGTCCAATGCCACCTGCCGACTTTGATATCATTGCGCATTGTTC 27783756
Query 156227 TACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACT 156286
|| | || ||||| |||||||| |||||| | || | || ||| | || |||
Sbjct 27783755 AACTGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAAAGAAAACATGAAGA 27783696
Query 156287 TAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAA 156341
||||| || || ||| | || || || || |||| ||||||| |||||
Sbjct 27783695 CAATTGTGGACGATTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAA 27783641
>seq6
Length=26536676
Score = 98.7 bits (108), Expect = 3e-15
Identities = 168/244 (69%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634
|||||| |||||| | ||||||||| || || |||||| || ||| || ||||| |||
Sbjct 3653215 TCCATAGCCTTGATGAGACGACGCTGGATGTAGCCAGTTTCAGCTGTCTTCACAGCCGTA 3653156
Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694
||||| | ||| | | || ||||| || |||||| | | ||| |||| || ||
Sbjct 3653155 TCAATCAAACCTTCTCTGCCGCCCATGGCGTGGAAGTAGAACTCGGACGGTGTCAGGCCG 3653096
Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAG 302754
| | | | ||| |||| || || || | | ||| || || || |||| | ||
Sbjct 3653095 GCCAGATACGAGTTCTCCACAAAGCCCCTAGACTCTGGACCATAATCATCCTTGATGAAA 3653036
Query 302755 TGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGT 302814
|| ||||| || | || |||| ||||| || ||||| || || |||||||||||
Sbjct 3653035 TGCGGCAGAGTGCGCTTGCGGAAGCCATATGGTATGCGCTTGCCCTCCACGTTCTGCTGG 3652976
Query 302815 CCCA 302818
||||
Sbjct 3652975 CCCA 3652972
>seq1
Length=29979347
Score = 95.1 bits (104), Expect = 4e-14
Identities = 149/208 (72%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
||| | || ||||||||| |||||| || |||||||||||||| || || || || |
Sbjct 11908364 TGGCCAATTGTCATACGAGAGGGAATGGCGTGGGGATTGATGATAATATCTGGCGCCAAT 11908423
Query 251899 CCATCAGCA-GTGAAGGGCATATCCTTTTCCTCAATAAT-GTTTCCAATAGTTCCCTTTT 251956
|| || ||| ||||| ||||| |||| | || ||| | | | ||| |||||||| |
Sbjct 11908424 CCCTC-GCAGGTGAACGGCATGTCCTCCT-GTCGATACTGGATGCCACATGTTCCCTTCT 11908481
Query 251957 GTCCGTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAA 252016
| ||||||||||| |||||| || ||||| || ||| || ||| | ||||
Sbjct 11908482 GCCCGTGACGAGAGGCGAACTTGTCGCCAATCTGTGGTATGCGCACGGAACGCACACGAA 11908541
Query 252017 CCTTACAGAAGTTGTAACCATCACCGTT 252044
||| ||||| ||||| || || | |||
Sbjct 11908542 TCTTGCAGAACTTGTAGCCCTCGCTGTT 11908569
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471757670346986
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |