Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2 143 8e-29 seq6 98.7 3e-15 seq1 95.1 4e-14 >seq2 Length=27840087 Score = 143 bits (158), Expect = 8e-29 Identities = 615/955 (64%), Gaps = 23/955 (2%) Strand=Plus/Minus Query 155400 AATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAA--TTGCTCC 155457 |||| ||| || || || || ||||||||||| | || || || | |||| ||| | Sbjct 27784585 AATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGAC-GTAAATTTGAT-- 27784529 Query 155458 TGCTTGTCTTCTTG-TTTGGGTAAAAATTCACATCAATAATGTTATTTAAATTT---GTA 155513 | || ||||| | ||||| |||| | |||||| || |||||||| ||| ||| Sbjct 27784528 TTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGTA 27784469 Query 155514 ACCAATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACA 155573 || | | || ||||| ||| | || | ||||| | | ||| |||| | ||| Sbjct 27784468 ACGATT---TTAGTTACTTCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCACA 27784412 Query 155574 AACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTA 155632 |||||| ||| | |||||||||| |||||| || || | || | || | || || Sbjct 27784411 AACATATTAAGTGCGATAGACGCCAAATTACACACAGCTATTTCATCTGGTGCCG-AATA 27784353 Query 155633 TTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGA 155692 ||| || || || |||||| ||| | || || || || | ||| | ||||| Sbjct 27784352 TTCAACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCT 27784293 Query 155693 TTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTC 155752 ||| |||||||||| ||||| ||| ||||| || || || ||||| | || | || Sbjct 27784292 TTTTCTGTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTC 27784233 Query 155753 CAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTG-TTGTATCTGCCTTCCGACT 155811 | || | ||| || | || |||| | || | || || || || | Sbjct 27784232 AATGATGGCAAACCAAAGAGATTGAGCCTTAA-TAACTCGATTCGCTCGTCCCTCTCGTT 27784174 Query 155812 CATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACT 155871 ||||||| ||||| || || |||| ||||| || ||| || |||||||| | Sbjct 27784173 CATATTTGATATAGAGGTTTTCAAAATCTTCACCCCAAACATCTGGGAGGCCAGGGCATT 27784114 Query 155872 TATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCAC 155931 ||| || || | | ||||| || |||| | ||||| | |||||| | |||| Sbjct 27784113 TATGTGGACACATTAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATCAG 27784054 Query 155932 TCGCCCAAATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCCGTGATTCTTC 155990 ||| | ||| | ||||| || | ||| | || |||||| | || ||| || Sbjct 27784053 GTATCCACAATGCAAAAAAAAGATCGCGTGCACGATG-CTCCTCCTTTCCAGTATTTTTT 27783995 Query 155991 CGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTA 156050 || || || ||||| | ||| | || ||||||| ||| |||||||| Sbjct 27783994 TTAAGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAAATATATAGCAAATGCT 27783935 Query 156051 CCATTCCTCTTGCCA---CCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGC 156107 ||| || || ||| |||||||| ||||| || || ||||| || || | || | Sbjct 27783934 CCAGGTCTTTTACCACCGCCCTGATCAACATAACGCGCGACATTATTAAATACTCTTAAC 27783875 Query 156108 ATAGG-AATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCG 156166 || || | |||| ||||| |||||||| || ||||| | ||| | || | || Sbjct 27783874 ATTGGTACTAAT-CCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCG 27783816 Query 156167 AACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTT 156226 || | |||| || |||||||| ||||||| | | || || || ||||||| | Sbjct 27783815 AATACAGTGAACATTAAGTCCAATGCCACCTGCCGACTTTGATATCATTGCGCATTGTTC 27783756 Query 156227 TACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACT 156286 || | || ||||| |||||||| |||||| | || | || ||| | || ||| Sbjct 27783755 AACTGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAAAGAAAACATGAAGA 27783696 Query 156287 TAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAA 156341 ||||| || || ||| | || || || || |||| ||||||| ||||| Sbjct 27783695 CAATTGTGGACGATTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAA 27783641 >seq6 Length=26536676 Score = 98.7 bits (108), Expect = 3e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| | ||||||||| || || |||||| || ||| || ||||| ||| Sbjct 3653215 TCCATAGCCTTGATGAGACGACGCTGGATGTAGCCAGTTTCAGCTGTCTTCACAGCCGTA 3653156 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 ||||| | ||| | | || ||||| || |||||| | | ||| |||| || || Sbjct 3653155 TCAATCAAACCTTCTCTGCCGCCCATGGCGTGGAAGTAGAACTCGGACGGTGTCAGGCCG 3653096 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAG 302754 | | | | ||| |||| || || || | | ||| || || || |||| | || Sbjct 3653095 GCCAGATACGAGTTCTCCACAAAGCCCCTAGACTCTGGACCATAATCATCCTTGATGAAA 3653036 Query 302755 TGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGT 302814 || ||||| || | || |||| ||||| || ||||| || || ||||||||||| Sbjct 3653035 TGCGGCAGAGTGCGCTTGCGGAAGCCATATGGTATGCGCTTGCCCTCCACGTTCTGCTGG 3652976 Query 302815 CCCA 302818 |||| Sbjct 3652975 CCCA 3652972 >seq1 Length=29979347 Score = 95.1 bits (104), Expect = 4e-14 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||| | || ||||||||| |||||| || |||||||||||||| || || || || | Sbjct 11908364 TGGCCAATTGTCATACGAGAGGGAATGGCGTGGGGATTGATGATAATATCTGGCGCCAAT 11908423 Query 251899 CCATCAGCA-GTGAAGGGCATATCCTTTTCCTCAATAAT-GTTTCCAATAGTTCCCTTTT 251956 || || ||| ||||| ||||| |||| | || ||| | | | ||| |||||||| | Sbjct 11908424 CCCTC-GCAGGTGAACGGCATGTCCTCCT-GTCGATACTGGATGCCACATGTTCCCTTCT 11908481 Query 251957 GTCCGTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAA 252016 | ||||||||||| |||||| || ||||| || ||| || ||| | |||| Sbjct 11908482 GCCCGTGACGAGAGGCGAACTTGTCGCCAATCTGTGGTATGCGCACGGAACGCACACGAA 11908541 Query 252017 CCTTACAGAAGTTGTAACCATCACCGTT 252044 ||| ||||| ||||| || || | ||| Sbjct 11908542 TCTTGCAGAACTTGTAGCCCTCGCTGTT 11908569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471757670346986