Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq6 116 5e-20 seq4 89.7 6e-12 >seq6 Length=26536676 Score = 116 bits (128), Expect = 5e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||||||||| |||||| | | ||||| || ||| | | || || ||| || Sbjct 15973136 AGAAGCGCACCGATGACATCACATCCTGGGATGCAGATTTTCTCAAAGTGGACCAGGGCA 15973077 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || || || ||||| | ||||||||||| | || |||||| |||| || || Sbjct 15973076 CACTATTCGAACTGATCTTAGCCGCCAACTATTTGGATATCAAGGGCTTGCTGGAACTAA 15973017 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| | |||||||| ||||| ||||||||| | || ||||| ||||| || || | Sbjct 15973016 CCTGCAAGACCGTGGCCAATATGATTAAGGGCAAGACACCYGAGGACATCCGAAAAACGT 15972957 Query 1592286 TTAACATCAAG 1592296 ||||||| ||| Sbjct 15972956 TTAACATTAAG 15972946 >seq4 Length=23952536 Score = 89.7 bits (98), Expect = 6e-12 Identities = 189/280 (68%), Gaps = 3/280 (1%) Strand=Plus/Plus Query 869169 CACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGA 869228 ||| |||| | || |||||||| ||||| || ||| |||| || |||||||| | Sbjct 3358463 CACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCGGGCATCA 3358522 Query 869229 GGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGA 869288 | || || ||||| ||||||||||| | | || ||||| || ||||| ||||| | Sbjct 3358523 GACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCCTCCA 3358582 Query 869289 CGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACT 869348 |||| || || | |||| | |||| ||||| ||| ||| || || ||||| Sbjct 3358583 CGGCAGCGAACGCAATGATTCTCTCGCCAAAG--TTCGCCGCCTTCGATG-AAATCCAAG 3358639 Query 869349 TCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT 869408 | |||||| ||||||||| | | || | |||| || || ||||| || || | Sbjct 3358640 AGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACAGAT 3358699 Query 869409 GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAG 869448 ||| ||| || ||| | | ||| || |||||||| Sbjct 3358700 AATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAG 3358739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106878398437426