Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq6 116 5e-20
seq4 89.7 6e-12
>seq6
Length=26536676
Score = 116 bits (128), Expect = 5e-20
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165
||||||||||||| |||||| | | ||||| || ||| | | || || ||| ||
Sbjct 15973136 AGAAGCGCACCGATGACATCACATCCTGGGATGCAGATTTTCTCAAAGTGGACCAGGGCA 15973077
Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225
| || || || ||||| | ||||||||||| | || |||||| |||| || ||
Sbjct 15973076 CACTATTCGAACTGATCTTAGCCGCCAACTATTTGGATATCAAGGGCTTGCTGGAACTAA 15973017
Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285
|||||| | |||||||| ||||| ||||||||| | || ||||| ||||| || || |
Sbjct 15973016 CCTGCAAGACCGTGGCCAATATGATTAAGGGCAAGACACCYGAGGACATCCGAAAAACGT 15972957
Query 1592286 TTAACATCAAG 1592296
||||||| |||
Sbjct 15972956 TTAACATTAAG 15972946
>seq4
Length=23952536
Score = 89.7 bits (98), Expect = 6e-12
Identities = 189/280 (68%), Gaps = 3/280 (1%)
Strand=Plus/Plus
Query 869169 CACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGA 869228
||| |||| | || |||||||| ||||| || ||| |||| || |||||||| |
Sbjct 3358463 CACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCGGGCATCA 3358522
Query 869229 GGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGA 869288
| || || ||||| ||||||||||| | | || ||||| || ||||| ||||| |
Sbjct 3358523 GACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCCTCCA 3358582
Query 869289 CGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACT 869348
|||| || || | |||| | |||| ||||| ||| ||| || || |||||
Sbjct 3358583 CGGCAGCGAACGCAATGATTCTCTCGCCAAAG--TTCGCCGCCTTCGATG-AAATCCAAG 3358639
Query 869349 TCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT 869408
| |||||| ||||||||| | | || | |||| || || ||||| || || |
Sbjct 3358640 AGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACAGAT 3358699
Query 869409 GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAG 869448
||| ||| || ||| | | ||| || ||||||||
Sbjct 3358700 AATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAG 3358739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106878398437426
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |