Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2 206 2e-48 seq6 102 7e-17 seq3 100 3e-16 >seq2 Length=27840087 Score = 206 bits (228), Expect = 2e-48 Identities = 725/1111 (65%), Gaps = 36/1111 (3%) Strand=Plus/Minus Query 138153 TTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCC 138212 ||||| |||||| || | ||| |||| ||| |||||||| || | ||||||||||| || Sbjct 27785312 TTTATTTACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCC 27785253 Query 138213 CGTTTTTA-ACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCG 138271 || || | |||| ||||| | | || | || || || || | | | ||| | | Sbjct 27785252 GGTCTTAAGACCCGCTTTCC-ATGAATAAAAATGGATTGACGTTAATTTTCCATAATTGG 27785194 Query 138272 GTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGG 138331 ||| || | | || || || || ||||| ||||| || || || |||| |||| | Sbjct 27785193 GTTCAGCTACATGAATATTGAAAGACTGACTTTGATCAATAAACGCTCCTCTATCAGCCG 27785134 Query 138332 CCATGTTAATTAAATT--TTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAAT 138389 |||| || || | || ||| | || |||||||| || || || | ||||||||| Sbjct 27785133 CCATTTTTAT--AGTTGATTTGACTGAAATTTCCCACACAGTTTTATACAAATCACGAAT 27785076 Query 138390 ATGTCGCGGTATTGTTGCAATATTTTGAAT-GCTCC-CG--TTGGCCGCAATGATGCGAT 138445 | | || || | | |||||||||| || | || || ||| || || ||| Sbjct 27785075 TTCTTTAGGAATAGATTCAATATTTTGTATTGAACCACGACTTGAT----ATTATTTGAT 27785020 Query 138446 TTCTCATGTCATCGTTGTACAGATTCAACTTGA-TCAAGTCGTTTATCAGATATCTGTTT 138504 || |||| || || | ||| || ||| || | | || || || | | ||| Sbjct 27785019 TTTTCATCTCGTCATCCCACAAAT-CAAGTTCAGTTAAATCACGTAGTAAGTGGTGGTTC 27784961 Query 138505 ATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCA 138564 | ||||||||||| || | ||| ||||| | ||||||||| || ||||||| Sbjct 27784960 ACTACCTGAAATTCGCCAGACAAAACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCG 27784901 Query 138565 AACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAA 138624 ||||| || || || |||| || || || |||| || || |||||| || | | Sbjct 27784900 AACGACTCATTATTGCCCAATATTTGCGCAGTGGATGCTGTAGGCATGGGAGCGATGAGT 27784841 Query 138625 AGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAA 138684 | |||||| | | |||||| || || || || || | ||| ||||| | | Sbjct 27784840 AAAGAATTTCTGACACCGTGTTGCGCTATAGATTTTTTAAGAGCATTCCAATCCCAAAGA 27784781 Query 138685 TCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCT 138744 || | ||| ||| ||||||||||| ||||| || ||||| ||| | |||||||| Sbjct 27784780 TCTGTTGGTGATTTTTTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTGCCA 27784721 Query 138745 TCGTACGAATCGTATACACCAAACTCT-TGCGCCAACTCGTTGCTCGCCTCGAGCGCACC 138803 | || | || ||| || | |||| || || || || ||| || || | || || Sbjct 27784720 ACATAAGTCTCATATGGTCC-ATCTCTCTGAGCTAATTCACAGCTGGCTTCCAAAGCTCC 27784662 Query 138804 ATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGG 138863 |||||| ||||||||| |||||||||||| | || || || || ||||| || Sbjct 27784661 ATAGTATATAGTTTCGAAAATCTGCTGATTTAATAAAAATGCTTCACGACTTTCGTA-GG 27784603 Query 138864 CAT-GCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGAT 138922 || || | | | || ||||| || | |||||| || || | || | ||| || | Sbjct 27784602 AATACCGCATTAATATTAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGT 27784543 Query 138923 GGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGT 138982 | || | |||||| ||| || || | ||| || || |||| ||| || ||||| | Sbjct 27784542 GACGTAAATTTGATTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTAT 27784483 Query 138983 TTAAATTTCGCACGACCACCTTAGTCGTA-TGCTTTAATC-GTTCAAAATCGTATGTGCC 139040 |||| ||| | || | ||||| || | |||||| | || ||| || || | Sbjct 27784482 TTAAGTTTTTCGTAACGATTTTAGT--TACTTCTTTAAGCTTTTTAAAGTCATAAG---- 27784429 Query 139041 CCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACAC 139100 || || | |||| ||||| | || | || || || | || ||||| Sbjct 27784428 ---ATT----TCTCCTGCGTC-ACAAACATATTAAGTGCGATAGACGCCAAATTACACAC 27784377 Query 139101 CGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGAT 139160 || | ||| || || | ||||| || ||||| | |||| |||||| || || || Sbjct 27784376 AGCTATTTCATCTGGTGCCGAATATTCAACTATTTCTGTGCACAGATTACTGCATTTTAT 27784317 Query 139161 CGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGG 139220 || || | ||||||||| |||||||||| |||||||| || || | | ||| || || Sbjct 27784316 AGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAGTCCTTAAATAACATGTAAGG 27784257 Query 139221 TGTGCCAGTTTCCACTTGTGTCTCTATAATG 139251 || ||||| || ||||| | || || ||| Sbjct 27784256 AGTACCAGTCTCTACTTGAGATTCAATGATG 27784226 Score = 138 bits (152), Expect = 1e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| ||||||| || ||||| || || ||||| | || || || || | Sbjct 185371 ATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATTACTTTGGAGGTCGAGCCCTCT 185430 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||||||||| ||||| || || ||||| Sbjct 185431 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAG 185490 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || |||||||||||| | | |||| || || ||| Sbjct 185491 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 185550 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 ||||| ||||| || || | ||||||||| | || |||| || ||| | |||||| Sbjct 185551 ATTCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTGCGTGGTGGCATCATTGAGCC 185609 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| ||||||| ||||| ||||| || || || || || || ||| | Sbjct 14207675 ACAATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACCG 14207616 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || | || | || ||| |||||||| |||||||||||||| ||||| ||| Sbjct 14207615 TCGGATACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGAT 14207556 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || ||| | |||||||| || || || |||| ||| | | | || || || Sbjct 14207555 CAGCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTAC 14207496 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| ||||| || || || | ||||||||| Sbjct 14207495 AACATCCAAAAAGAGTCAACCTTGCACTTGGTG 14207463 >seq6 Length=26536676 Score = 102 bits (112), Expect = 7e-17 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || | || || || || | Sbjct 9462448 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCCTCG 9462389 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||||||||| || || || || || ||||| Sbjct 9462388 GACACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 9462329 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || |||||||||||| | | |||| || || ||| Sbjct 9462328 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTAYAAC 9462269 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || || |||| | || |||| || ||| Sbjct 9462268 ATCCAGAAGGAGTCGACCCTTCATCTGGTCCTCCGTCTGCGTGGTGGC 9462221 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || ||||| || || | || || || || | Sbjct 9462220 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACCTTGGAGGTCGAGCCCTCG 9462161 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || || || || || ||||| Sbjct 9462160 GACACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 9462101 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || |||||||||||| | | |||| || || ||| Sbjct 9462100 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 9462041 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || | ||||||||| | || | || || ||| Sbjct 9462040 ATCCAGAAGGAGTCTACTTTGCACTTGGTGCTCCGTCTACGTGGTGGC 9461993 >seq3 Length=22052390 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| || ||||| ||||| || || || ||||| || ||| ||||||| ||||| || Sbjct 1975317 AAGATTCAGGACAAGGAAGGTATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 1975376 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || ||||| ||| | | | |||| ||||| |||||||||||||| || || || || Sbjct 1975377 CAACTGGAAGATGGTCGCACCCTGTCCGATTACAACATTCAAAAGGAGTCTACCCTTCAT 1975436 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||| |||| || || Sbjct 1975437 TTGGTACTGCGTCTGCGTGGCGG 1975459 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| ||||||| | || || || || || || | || || || | || Sbjct 1974945 ATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCTTGGAGGTTGAGCCTTCC 1975004 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| ||||| || || ||||| || || ||||| Sbjct 1975005 GATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAGGGAATTCCACCAGATCAG 1975064 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || || ||||| ||| | | | |||| || || || Sbjct 1975065 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGCCGCACCTTGTCTGACTACAAT 1975124 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || || |||| | || |||| || || Sbjct 1975125 ATCCAGAAGGAGTCGACCCTTCATCTGGTCCTCCGTCTGCGTGGTGG 1975171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449879727817840