Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq2 206 2e-48
seq6 102 7e-17
seq3 100 3e-16
>seq2
Length=27840087
Score = 206 bits (228), Expect = 2e-48
Identities = 725/1111 (65%), Gaps = 36/1111 (3%)
Strand=Plus/Minus
Query 138153 TTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCC 138212
||||| |||||| || | ||| |||| ||| |||||||| || | ||||||||||| ||
Sbjct 27785312 TTTATTTACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCC 27785253
Query 138213 CGTTTTTA-ACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCG 138271
|| || | |||| ||||| | | || | || || || || | | | ||| | |
Sbjct 27785252 GGTCTTAAGACCCGCTTTCC-ATGAATAAAAATGGATTGACGTTAATTTTCCATAATTGG 27785194
Query 138272 GTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGG 138331
||| || | | || || || || ||||| ||||| || || || |||| |||| |
Sbjct 27785193 GTTCAGCTACATGAATATTGAAAGACTGACTTTGATCAATAAACGCTCCTCTATCAGCCG 27785134
Query 138332 CCATGTTAATTAAATT--TTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAAT 138389
|||| || || | || ||| | || |||||||| || || || | |||||||||
Sbjct 27785133 CCATTTTTAT--AGTTGATTTGACTGAAATTTCCCACACAGTTTTATACAAATCACGAAT 27785076
Query 138390 ATGTCGCGGTATTGTTGCAATATTTTGAAT-GCTCC-CG--TTGGCCGCAATGATGCGAT 138445
| | || || | | |||||||||| || | || || ||| || || |||
Sbjct 27785075 TTCTTTAGGAATAGATTCAATATTTTGTATTGAACCACGACTTGAT----ATTATTTGAT 27785020
Query 138446 TTCTCATGTCATCGTTGTACAGATTCAACTTGA-TCAAGTCGTTTATCAGATATCTGTTT 138504
|| |||| || || | ||| || ||| || | | || || || | | |||
Sbjct 27785019 TTTTCATCTCGTCATCCCACAAAT-CAAGTTCAGTTAAATCACGTAGTAAGTGGTGGTTC 27784961
Query 138505 ATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCA 138564
| ||||||||||| || | ||| ||||| | ||||||||| || |||||||
Sbjct 27784960 ACTACCTGAAATTCGCCAGACAAAACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCG 27784901
Query 138565 AACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAA 138624
||||| || || || |||| || || || |||| || || |||||| || | |
Sbjct 27784900 AACGACTCATTATTGCCCAATATTTGCGCAGTGGATGCTGTAGGCATGGGAGCGATGAGT 27784841
Query 138625 AGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAA 138684
| |||||| | | |||||| || || || || || | ||| ||||| | |
Sbjct 27784840 AAAGAATTTCTGACACCGTGTTGCGCTATAGATTTTTTAAGAGCATTCCAATCCCAAAGA 27784781
Query 138685 TCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCT 138744
|| | ||| ||| ||||||||||| ||||| || ||||| ||| | ||||||||
Sbjct 27784780 TCTGTTGGTGATTTTTTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTGCCA 27784721
Query 138745 TCGTACGAATCGTATACACCAAACTCT-TGCGCCAACTCGTTGCTCGCCTCGAGCGCACC 138803
| || | || ||| || | |||| || || || || ||| || || | || ||
Sbjct 27784720 ACATAAGTCTCATATGGTCC-ATCTCTCTGAGCTAATTCACAGCTGGCTTCCAAAGCTCC 27784662
Query 138804 ATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGG 138863
|||||| ||||||||| |||||||||||| | || || || || ||||| ||
Sbjct 27784661 ATAGTATATAGTTTCGAAAATCTGCTGATTTAATAAAAATGCTTCACGACTTTCGTA-GG 27784603
Query 138864 CAT-GCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGAT 138922
|| || | | | || ||||| || | |||||| || || | || | ||| || |
Sbjct 27784602 AATACCGCATTAATATTAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGT 27784543
Query 138923 GGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGT 138982
| || | |||||| ||| || || | ||| || || |||| ||| || ||||| |
Sbjct 27784542 GACGTAAATTTGATTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTAT 27784483
Query 138983 TTAAATTTCGCACGACCACCTTAGTCGTA-TGCTTTAATC-GTTCAAAATCGTATGTGCC 139040
|||| ||| | || | ||||| || | |||||| | || ||| || || |
Sbjct 27784482 TTAAGTTTTTCGTAACGATTTTAGT--TACTTCTTTAAGCTTTTTAAAGTCATAAG---- 27784429
Query 139041 CCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACAC 139100
|| || | |||| ||||| | || | || || || | || |||||
Sbjct 27784428 ---ATT----TCTCCTGCGTC-ACAAACATATTAAGTGCGATAGACGCCAAATTACACAC 27784377
Query 139101 CGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGAT 139160
|| | ||| || || | ||||| || ||||| | |||| |||||| || || ||
Sbjct 27784376 AGCTATTTCATCTGGTGCCGAATATTCAACTATTTCTGTGCACAGATTACTGCATTTTAT 27784317
Query 139161 CGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGG 139220
|| || | ||||||||| |||||||||| |||||||| || || | | ||| || ||
Sbjct 27784316 AGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAGTCCTTAAATAACATGTAAGG 27784257
Query 139221 TGTGCCAGTTTCCACTTGTGTCTCTATAATG 139251
|| ||||| || ||||| | || || |||
Sbjct 27784256 AGTACCAGTCTCTACTTGAGATTCAATGATG 27784226
Score = 138 bits (152), Expect = 1e-27
Identities = 174/239 (73%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| ||||||| || ||||| || || ||||| | || || || || |
Sbjct 185371 ATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATTACTTTGGAGGTCGAGCCCTCT 185430
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||||||||||||||| ||||| || || |||||
Sbjct 185431 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAG 185490
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| ||||||| ||||| || |||||||||||| | | |||| || || |||
Sbjct 185491 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 185550
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942
||||| ||||| || || | ||||||||| | || |||| || ||| | ||||||
Sbjct 185551 ATTCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTGCGTGGTGGCATCATTGAGCC 185609
Score = 123 bits (136), Expect = 2e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| |||||||||||| ||||||| ||||| ||||| || || || || || || ||| |
Sbjct 14207675 ACAATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACCG 14207616
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| || || | || | || ||| |||||||| |||||||||||||| ||||| |||
Sbjct 14207615 TCGGATACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGAT 14207556
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
|| || ||| | |||||||| || || || |||| ||| | | | || || ||
Sbjct 14207555 CAGCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTAC 14207496
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTG 24913
||||| ||||| || || || | |||||||||
Sbjct 14207495 AACATCCAAAAAGAGTCAACCTTGCACTTGGTG 14207463
>seq6
Length=26536676
Score = 102 bits (112), Expect = 7e-17
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || | || || || || || || | || || || || |
Sbjct 9462448 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCCTCG 9462389
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || || |||||||||||||| || || || || || |||||
Sbjct 9462388 GACACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 9462329
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| ||||||| || || || |||||||||||| | | |||| || || |||
Sbjct 9462328 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTAYAAC 9462269
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
|| || ||||| ||||| || || |||| | || |||| || |||
Sbjct 9462268 ATCCAGAAGGAGTCGACCCTTCATCTGGTCCTCCGTCTGCGTGGTGGC 9462221
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || | || || ||||| || || | || || || || |
Sbjct 9462220 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACCTTGGAGGTCGAGCCCTCG 9462161
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||||||||| || || || || || |||||
Sbjct 9462160 GACACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 9462101
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| ||||||| || || || |||||||||||| | | |||| || || |||
Sbjct 9462100 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 9462041
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
|| || ||||| || || | ||||||||| | || | || || |||
Sbjct 9462040 ATCCAGAAGGAGTCTACTTTGCACTTGGTGCTCCGTCTACGTGGTGGC 9461993
>seq3
Length=22052390
Score = 100 bits (110), Expect = 3e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
||||| || ||||| ||||| || || || ||||| || ||| ||||||| ||||| ||
Sbjct 1975317 AAGATTCAGGACAAGGAAGGTATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 1975376
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907
|| ||||| ||| | | | |||| ||||| |||||||||||||| || || || ||
Sbjct 1975377 CAACTGGAAGATGGTCGCACCCTGTCCGATTACAACATTCAAAAGGAGTCTACCCTTCAT 1975436
Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930
||||| |||| |||| || ||
Sbjct 1975437 TTGGTACTGCGTCTGCGTGGCGG 1975459
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| ||||||| | || || || || || || | || || || | ||
Sbjct 1974945 ATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCTTGGAGGTTGAGCCTTCC 1975004
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || ||||| ||||| || || ||||| || || |||||
Sbjct 1975005 GATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAGGGAATTCCACCAGATCAG 1975064
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| ||||||| ||||| || || ||||| ||| | | | |||| || || ||
Sbjct 1975065 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGCCGCACCTTGTCTGACTACAAT 1975124
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| ||||| || || |||| | || |||| || ||
Sbjct 1975125 ATCCAGAAGGAGTCGACCCTTCATCTGGTCCTCCGTCTGCGTGGTGG 1975171
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449879727817840
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