Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq6 105 1e-16 seq4 91.5 2e-12 seq3 89.7 8e-12 >seq6 Length=26536676 Score = 105 bits (116), Expect = 1e-16 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || ||||||||||| ||||| | | ||||| | ||| | | || ||||| | Sbjct 15973137 GAGAAGCGCACCGATGACATCACATCCTGGGATGCAGATTTTCTCAAAGTGGACCAGGGC 15973078 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 || || || || ||||| | ||||||||||| | || |||||| | | || || | Sbjct 15973077 ACACTATTCGAACTGATCTTAGCCGCCAACTATTTGGATATCAAGGGCTTGCTGGAACTA 15973018 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 ||||||||||||||||| | || ||||||||| | || ||||||||||| || || Sbjct 15973017 ACCTGCAAGACCGTGGCCAATATGATTAAGGGCAAGACACCYGAGGACATCCGAAAAACG 15972958 Query 2035746 TTTAACATCAAG 2035757 |||||||| ||| Sbjct 15972957 TTTAACATTAAG 15972946 >seq4 Length=23952536 Score = 91.5 bits (100), Expect = 2e-12 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 ||||| | || |||| || ||| ||||||| ||||||| || | || |||||| Sbjct 3358792 AAACAACGAGCTTCGGTTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTA 3358851 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 || ||||| ||| |||||| || |||||||| || || ||||||||||||||||| Sbjct 3358852 ACAATGCCATCGGAGGCGGCAAAGAAGGCGAGCACATGGGAGATAAAGTGACGCTCGTTA 3358911 Query 796261 TC-GCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCA 796319 || | | | || | |||||| | | ||| ||| || ||||| || | ||||| Sbjct 3358912 TCAGTTAAACGTG-CCCAGTCGGTCAAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCA 3358970 Query 796320 AAAGGAGGCCTCGGCCT 796336 || |||||||| |||| Sbjct 3358971 GAATGAGGCCTCAGCCT 3358987 Score = 86.0 bits (94), Expect = 1e-10 Identities = 221/331 (67%), Gaps = 13/331 (4%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| |||||| || ||| ||| || |||||||| || || || ||| Sbjct 3358474 CCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCGGGCATCAGACCACGTTTC 3358533 Query 794401 TTGAGCCAAAAGAT---GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCA 794457 || ||||||||||| |||| || ||||| || ||||| ||||| ||||| || Sbjct 3358534 TTCAGCCAAAAGATCGAGGCA---AAGCTGCCACTAAAGAAGATTCCCTCCACGGCAGCG 3358590 Query 794458 AAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTG--ATCCACTTCATCG 794515 || | | || | ||| || ||||| || ||| ||| | || ||||| | || Sbjct 3358591 AACGCAATGATTCTCTC-GCCAAAGT-TC---GCCGCCTTCGATGAAATCCAAGAGAGCG 3358645 Query 794516 CCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCT 794575 |||| || |||||| | | || | ||||| || || ||||| || || | ||| Sbjct 3358646 CCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACAGATAATCCC 3358705 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 || || ||| | | || || ||||| || | ||| |||| ||||| | | Sbjct 3358706 GTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTACATCTCCGAGTGCACAT 3358765 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || |||||||| || |||||||| || || Sbjct 3358766 TCTCCATGGCGATTTGAAAGCCATAGAAACA 3358796 >seq3 Length=22052390 Score = 89.7 bits (98), Expect = 8e-12 Identities = 177/262 (68%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 2411714 GCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGA 2411773 ||||||| |||||||| ||||| | || ||||| || ||| ||||| | | Sbjct 21937198 GCTGGTAGTCGCTGCCCTTTACAAACTTCAGCTTATCCAATGGAACGTCAATGGAACGCA 21937257 Query 2411774 GCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCG 2411833 ||| |||||||| | |||||| | | || |||| | || ||| |||| Sbjct 21937258 ACATCGCCTTGATCACCTGCTCGTAGTATTTGGTGCGCAGCTCAAGCAGCGGCCATGGCG 21937317 Query 2411834 TCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCGACATCCGG 2411893 ||| ||||| | | |||||||| |||||||| || || ||||| ||| |||| Sbjct 21937318 CCTTCATGTTGTCCAAATAGGCGTGCAGATCGGCAAACAGTATTGTCACCTCACAACCGG 21937377 Query 2411894 CCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCCCAGATGGGGCTTGCCCG 2411953 | | | || || || | || | ||||||||||| ||| | | ||| ||||| |||| Sbjct 21937378 CTTTCAAGAAATCCGCAATCTTGGACATGGGCACAAAATAGGCGACATGTGGCTTTCCCG 21937437 Query 2411954 TCGGCGCGGTGCCCCAATAAAT 2411975 ||| ||| |||||||| || || Sbjct 21937438 TCGTCGCAGTGCCCCAGTAGAT 21937459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915908341645142