Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq6 105 1e-16
seq4 91.5 2e-12
seq3 89.7 8e-12
>seq6
Length=26536676
Score = 105 bits (116), Expect = 1e-16
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625
|| ||||||||||| ||||| | | ||||| | ||| | | || ||||| |
Sbjct 15973137 GAGAAGCGCACCGATGACATCACATCCTGGGATGCAGATTTTCTCAAAGTGGACCAGGGC 15973078
Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685
|| || || || ||||| | ||||||||||| | || |||||| | | || || |
Sbjct 15973077 ACACTATTCGAACTGATCTTAGCCGCCAACTATTTGGATATCAAGGGCTTGCTGGAACTA 15973018
Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745
||||||||||||||||| | || ||||||||| | || ||||||||||| || ||
Sbjct 15973017 ACCTGCAAGACCGTGGCCAATATGATTAAGGGCAAGACACCYGAGGACATCCGAAAAACG 15972958
Query 2035746 TTTAACATCAAG 2035757
|||||||| |||
Sbjct 15972957 TTTAACATTAAG 15972946
>seq4
Length=23952536
Score = 91.5 bits (100), Expect = 2e-12
Identities = 140/197 (71%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200
||||| | || |||| || ||| ||||||| ||||||| || | || ||||||
Sbjct 3358792 AAACAACGAGCTTCGGTTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTA 3358851
Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260
|| ||||| ||| |||||| || |||||||| || || |||||||||||||||||
Sbjct 3358852 ACAATGCCATCGGAGGCGGCAAAGAAGGCGAGCACATGGGAGATAAAGTGACGCTCGTTA 3358911
Query 796261 TC-GCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCA 796319
|| | | | || | |||||| | | ||| ||| || ||||| || | |||||
Sbjct 3358912 TCAGTTAAACGTG-CCCAGTCGGTCAAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCA 3358970
Query 796320 AAAGGAGGCCTCGGCCT 796336
|| |||||||| ||||
Sbjct 3358971 GAATGAGGCCTCAGCCT 3358987
Score = 86.0 bits (94), Expect = 1e-10
Identities = 221/331 (67%), Gaps = 13/331 (4%)
Strand=Plus/Plus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|| |||||||| |||||| || ||| ||| || |||||||| || || || |||
Sbjct 3358474 CCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCGGGCATCAGACCACGTTTC 3358533
Query 794401 TTGAGCCAAAAGAT---GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCA 794457
|| ||||||||||| |||| || ||||| || ||||| ||||| ||||| ||
Sbjct 3358534 TTCAGCCAAAAGATCGAGGCA---AAGCTGCCACTAAAGAAGATTCCCTCCACGGCAGCG 3358590
Query 794458 AAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTG--ATCCACTTCATCG 794515
|| | | || | ||| || ||||| || ||| ||| | || ||||| | ||
Sbjct 3358591 AACGCAATGATTCTCTC-GCCAAAGT-TC---GCCGCCTTCGATGAAATCCAAGAGAGCG 3358645
Query 794516 CCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCT 794575
|||| || |||||| | | || | ||||| || || ||||| || || | |||
Sbjct 3358646 CCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACAGATAATCCC 3358705
Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635
|| || ||| | | || || ||||| || | ||| |||| ||||| | |
Sbjct 3358706 GTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTACATCTCCGAGTGCACAT 3358765
Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
| || |||||||| || |||||||| || ||
Sbjct 3358766 TCTCCATGGCGATTTGAAAGCCATAGAAACA 3358796
>seq3
Length=22052390
Score = 89.7 bits (98), Expect = 8e-12
Identities = 177/262 (68%), Gaps = 0/262 (0%)
Strand=Plus/Plus
Query 2411714 GCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGA 2411773
||||||| |||||||| ||||| | || ||||| || ||| ||||| | |
Sbjct 21937198 GCTGGTAGTCGCTGCCCTTTACAAACTTCAGCTTATCCAATGGAACGTCAATGGAACGCA 21937257
Query 2411774 GCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCG 2411833
||| |||||||| | |||||| | | || |||| | || ||| ||||
Sbjct 21937258 ACATCGCCTTGATCACCTGCTCGTAGTATTTGGTGCGCAGCTCAAGCAGCGGCCATGGCG 21937317
Query 2411834 TCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCGACATCCGG 2411893
||| ||||| | | |||||||| |||||||| || || ||||| ||| ||||
Sbjct 21937318 CCTTCATGTTGTCCAAATAGGCGTGCAGATCGGCAAACAGTATTGTCACCTCACAACCGG 21937377
Query 2411894 CCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCCCAGATGGGGCTTGCCCG 2411953
| | | || || || | || | ||||||||||| ||| | | ||| ||||| ||||
Sbjct 21937378 CTTTCAAGAAATCCGCAATCTTGGACATGGGCACAAAATAGGCGACATGTGGCTTTCCCG 21937437
Query 2411954 TCGGCGCGGTGCCCCAATAAAT 2411975
||| ||| |||||||| || ||
Sbjct 21937438 TCGTCGCAGTGCCCCAGTAGAT 21937459
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915908341645142
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |