Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_022613.1 Length=43686 Score E Sequences producing significant alignments: (Bits) Value seq2 102 2e-17 >seq2 Length=27840087 Score = 102 bits (112), Expect = 2e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 906 GAGCTGCCGGCTATGATCTGTTCAGTGCCTACGATATTACTGTTCCGGCACATGGTAGAG 965 ||||||||||||||||| | ||| || |||||| || || || || | ||| | || Sbjct 545416 GAGCTGCCGGCTATGATTTACGCAGCGCTTACGATGTTGTGGTGCCAGCGCGTGGCAAAG 545357 Query 966 CGGTGGTGCCTACCGATTTGATGTTACACTTTCCGGAGGGTTGTTACGGTCGCATCGCGC 1025 | ||||| || ||| || | | || | ||||| || | |||||||||| | || | Sbjct 545356 CTGTGGTCAAAACGGATCTGCAGGTGCAGGTGCCGGAAGGCTCTTACGGTCGCGTAGCAC 545297 Query 1026 CGCGCTCGGGATTAGCGACTAAGTTCTTTATCGATGTTGGCGCAGGAGTTATAGATCCGG 1085 ||||||| || | || ||| |||||||||||| ||||| || ||| | ||| || Sbjct 545296 CGCGCTCCGGGCTGGCCGTAAAGAACTTTATCGATGTGGGCGCCGGTGTTGTGGATGAGG 545237 Query 1086 ATTACCGGGGAAACGTTAGCGTTGTACTGTTTAA 1119 |||| || ||||| | | ||||| || || || Sbjct 545236 ATTATCGTGGAAATTTAGGTGTTGTCCTCTTCAA 545203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139668328892928