Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2 138 9e-28 seq6 114 1e-20 seq3 104 2e-17 >seq2 Length=27840087 Score = 138 bits (152), Expect = 9e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || |||||||| || | || || |||||||| ||||| || || | || |||||| | Sbjct 14207458 CGGAGCACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCA 14207517 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | ||| ||||||||| | || | | |||||||| || ||||| || |||||| Sbjct 14207518 TCTTCCAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 14207577 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || ||||||| | || | || || || |||| || |||||||| || Sbjct 14207578 TCCTGGATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATG 14207637 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || |||| |||||||||||| ||||||||| Sbjct 14207638 GTCTTACCCGTTAGGGTTTTAACAAAGATCTGCATT 14207673 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| |||||||| || | ||||| || || |||||||| || || | Sbjct 185597 CCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 185538 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || ||||| || | |||| | |||||||| || || Sbjct 185537 AGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGG 185478 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | || |||||| | || | |||||||| | || || Sbjct 185477 ATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 185418 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | ||| || || ||||| || | |||||||| || || |||||||| Sbjct 185417 TCCAAAGTAATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCATTTT 185368 >seq6 Length=26536676 Score = 114 bits (126), Expect = 1e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || |||| |||||| || || || || || ||||| || || | Sbjct 9462222 CCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTRTAGTCGGAC 9462281 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || |||||||| | |||| | |||||||| || ||| Sbjct 9462282 AGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGA 9462341 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| |||||||| | || || ||| |||| | ||||| || | || || Sbjct 9462342 ATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTGTCCGAGGGCTCAACC 9462401 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | ||| || || |||||||| || || || || || |||||||| || Sbjct 9462402 TCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATATT 9462451 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| || | || || || || || ||||| || || | | ||||| Sbjct 9462005 ACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCC 9462064 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || |||||||| | |||| | |||||||| || ||||||||||| || Sbjct 9462065 ATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTT 9462124 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || || ||| | || | ||||| || | || || || | || || Sbjct 9462125 GTCTTGGATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGAT 9462184 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||||| || || || || || |||||||| Sbjct 9462185 GGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 9462220 >seq3 Length=22052390 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || |||| |||||| || || || || || || || || || | Sbjct 1975171 CCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGAC 1975112 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || ||||| ||||| || | |||| | |||||||| || ||| Sbjct 1975111 AAGGTGCGGCCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGA 1975052 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| || ||||| ||| || | ||||| | || | || || ||| | || || Sbjct 1975051 ATTCCCTCCTTATCTTG-AATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAAC 1974993 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | || || || || || || || |||||||| || ||||||||||| Sbjct 1974992 CTCCAAGGTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCATTTT 1974942 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||| ||||||||||| || || || ||||||||||| ||||| | Sbjct 1975459 CCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGAC 1975400 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| || ||||| ||||| || | |||| | |||||||| || ||| Sbjct 1975399 AGGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1975340 Query 29680 ATACCCTCTTTGTCTTG 29696 ||||| || ||||| || Sbjct 1975339 ATACCTTCCTTGTCCTG 1975323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385204279738098