Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq1 241 1e-57
seq3 96.9 3e-14
seq518 95.1 9e-14
>seq1
Length=29979347
Score = 241 bits (266), Expect = 1e-57
Identities = 944/1465 (64%), Gaps = 22/1465 (2%)
Strand=Plus/Plus
Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485
|| || ||||| |||||||| |||||||| | || || || || ||||| ||||||||
Sbjct 13815851 GCGGTGACATTCAGAATACCGTTGGCATCAATGTCGAAGGTCACCTCAATCTGAGGGACA 13815910
Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545
|| | | || ||||| || || ||| | || | |||| |||||| || |||
Sbjct 13815911 CCGCGTGGTGCGGGTGGAATGCCCGACAACTCGAACTTGCCCAACAGATTATTGTCCTTA 13815970
Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605
|| | || ||||| ||| | | |||||| || | | || || || || ||
Sbjct 13815971 GTCATGGCACGCTCACCTTCGTAGACTTGGATCAACACACCGGGCTGGTTGTCCGAGTAG 13816030
Query 281606 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664
|| || || ||||| | | || || || || ||||| | | || | | |
Sbjct 13816031 GTGGTGAAGG-TCTGGGTCTGCTTTGTGGGGATGGTGGTGTTGCGCTTGATCAACACGCT 13816089
Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724
||| | || ||||| || || | ||| || || || || |||||||| | || | |
Sbjct 13816090 CATCACGCCGCCAGCGGTCTCGATACCCAGCGACAGGGGGGTGACATCGAGCAGCAACAG 13816149
Query 281725 ATTTTGAAGTTTTT-CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCAT 281783
|| || | || | | | | | | ||||| |||| || || | ||||||||||
Sbjct 13816150 ATCCTGCACTTCCTGCGACTTGTCGCCGTGCAAGA-TAGCAGCCTGGACGGCAGCACCAT 13816208
Query 281784 ATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-T 281842
| |||||||| ||||| || || | | | || || | || || ||||| | || |
Sbjct 13816209 AGGCAACAGCCTCATCGGGGTTGATGGACTTGTTCAGCTCCTTGCCGTTGAACAGATCCT 13816268
Query 281843 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 281902
| || | | | ||||| || ||||| | || || || || || ||||| || ||
Sbjct 13816269 GCAATAGGCGCTGC-ACCTTGGGGATACGGGTGGAGCCACCGACCAACACAATATCGTGA 13816327
Query 281903 ACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCT 281962
| || || |||| ||| | ||| || | || || ||||| || | |||
Sbjct 13816328 ATGGCCGACTTGTCCAATTTAGCATCACGCAATGCCTTCTCCACGGGGTCCATGGT-GCT 13816386
Query 281963 -CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GAG-TGACATTATA 282018
| |||| || | || ||||| || ||| | |||| ||| || || |
Sbjct 13816387 GCGGAACAGATCAGCGTTCAGCTCTTCAAAACGAGCGCGCGTAATCGAGGTG----TAGA 13816442
Query 282019 A-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077
| || | || ||||||| ||||| | ||||| | | || || || || || || |
Sbjct 13816443 AGTCGGTACCCTCGAACAGCGAATCGATCTCAATGCTCGCCTGGGTAGATGAGGAAAGAG 13816502
Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--T 282135
||| || ||||| ||||| || || | ||| | || | || ||| ||| | |
Sbjct 13816503 TACGCTTTGCACGCTCACAGGCAGTGCGTAGACGACGCAGAGCAC--GCTTGTTGGTAGT 13816560
Query 282136 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 282195
|| ||| | || | || | |||||| || | ||| | || || |||||||| ||
Sbjct 13816561 CAGATCCTTCTTGTGCTTGCGCTTGAACTCCTGCACAAAGTGAGTGACTAGACGATTGTC 13816620
Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255
||||| ||||| ||||| | || | || | |||| | | || | ||| | || ||
Sbjct 13816621 GAAATCCTCACCACCCAAATGGGTGTCACCAGCAGTAGATTTGACCTCGAAGATGCCGTC 13816680
Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315
|||| |||| || | |||||| || ||||| |||| ||| ||||| | |||||
Sbjct 13816681 ATCAATCGACAGAATGGAGACATCAAAAGTACCACCGCCCAAATCGAAAATCAACACATT 13816740
Query 282316 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 282375
||| | || || || || ||||| || | || |||||||| || |||||
Sbjct 13816741 ACGTTCACCAACAGCCTTCTTGTCCAGGCCATAAGCGATGGCCGCAGCAGTCGGCTCATT 13816800
Query 282376 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 282435
||||| | ||| || || | ||| || || | || ||||| || || || || | ||
Sbjct 13816801 GATAATACGCAATACGTTCAAACCGGCGATGGTGCCAGCATCCTTGGTAGCCTGACGCTG 13816860
Query 282436 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATA 282495
||||||||| ||||| || || |||||||| ||||||| || || || || | ||
Sbjct 13816861 TGAATCGTTGAAATAGGCGGGCACAGTAATGACGGCATTGGTAACCGTCTTGCCCAGGTA 13816920
Query 282496 AGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATA 282555
|| || || | ||||| || | || | ||| || || || | || || ||| |
Sbjct 13816921 CGCCTCGGCGGTCTCCTTCATCTTGGTCAACACCATGGAGGAGATCTCCTC-GGGGAAGA 13816979
Query 282556 TTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 282614
| ||| |||| | || | || || | | || || | |||| |||| |
Sbjct 13816980 AAGTCTTCTTCTCATCCTTGTACGTAACCTCGATCTTGGGCTTGCCATCAACGTTAACGA 13817039
Query 282615 CTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 282674
| | || ||||| | |||||||| || || || |||| || | | |||||
Sbjct 13817040 CCTCGAAAGGCCAGTGCTTCATATCAGACTGKACGGCCGCATCATCGAATTTGCGACCAA 13817099
Query 282675 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTG 282734
| | || || ||||| || ||||| | |||||| || | || | || | ||||| |
Sbjct 13817100 TCAGACGCTTAGCATCGAAGATAGTTTGGGTTGGGTTCATGGCCACCTGGTTCTTGGCGG 13817159
Query 282735 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 282794
| || ||||||| | | || ||||| || || | |||||| ||||| || || |||||||
Sbjct 13817160 CGTCACCAATCAAACGCTCCGTCTCCGTGAAGGCAACATAAGATGGGGTGGTACGATTAC 13817219
Query 282795 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 282854
| ||||| || ||||| || ||||| || |||| || | ||||| || ||| | |
Sbjct 13817220 CCTGATCGTTGGCAATGATCTCAACCTTGCCATGCTGGAACACACCCACGCAAGAGTAGG 13817279
Query 282855 TTGTTCCTAAATCAATACCAATAGC 282879
|||| || ||||||||||||| |||
Sbjct 13817280 TTGTGCCCAAATCAATACCAACAGC 13817304
Score = 111 bits (122), Expect = 1e-18
Identities = 211/306 (69%), Gaps = 11/306 (4%)
Strand=Plus/Plus
Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241
|| || ||||| || ||||| || || |||| | |||| |||| |||||| | |||
Sbjct 6720071 ACCAGCCGATTGTCGAAATCCTCGCCGCCCAGATGCGTATCACCTGCCGTAGCCTTCACT 6720130
Query 282242 TGGAAAAG---TCCATCTTCAA--GAGACAAAAGAGTAACATCATGGGTTCCACCACCCA 282296
| ||| || ||| || || | |||| | ||| || ||| ||| || || ||||
Sbjct 6720131 TCGAACAGCGATCCCTCGTCGATGGAGAGTATGGAG--ACGTCAAAGGTGCCGCCGCCCA 6720188
Query 282297 TATCAAAAATAAGTACATTCATTTCTTTGTCTT--GGTTTTTATCAAGACCATACGCAAA 282354
||| || || || ||||| | || | ||| | ||||| || || ||||| || |
Sbjct 6720189 AATCGAAGATCAGCACATT--TCGCTCTCCCTTCAGATTTTTGTCCAGGCCATAGGCGAG 6720246
Query 282355 AGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGC 282414
||||| || || || ||||| || || | || ||||| | ||| || || || ||
Sbjct 6720247 GGCAGCCGCCGTCGGCTCATTGATGATGCGCAGCACATTCAAACCGGCTATGGAGCCAGC 6720306
Query 282415 ATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474
||||||||| ||||| | || |||||||| || || || || || ||||| || |||||
Sbjct 6720307 ATCTTTAGTCGCTTGGCGCTGGGAATCGTTGAAGTACGCCGGCACCGTAATGACAGCATC 6720366
Query 282475 TGTTAC 282480
||||
Sbjct 6720367 CTTTAC 6720372
Score = 105 bits (116), Expect = 5e-17
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 282722 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 282781
|||| ||| |||||||| ||||| || | ||||| || |||| | ||||| || ||
Sbjct 6721099 TGATTTTTAGCTGCATCGCCAATTAGGCGCTCTGTGTCGTTAAAGGCCACATACGAGGGC 6721158
Query 282782 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 282841
|| || ||||| ||||||||||| |||||||| ||||||||| || ||||| |||||
Sbjct 6721159 GTCGTCCGATTGCCTTGATCATTGGCAATAATCTCAACTTTATTGTTCTGCCAAACACCC 6721218
Query 282842 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879
|| || | || || || | ||| |||||||| ||
Sbjct 6721219 ACGCAGGAGTAGGTGGTGCCCAGATCGATACCAATTGC 6721256
>seq3
Length=22052390
Score = 96.9 bits (106), Expect = 3e-14
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334
||||| ||| || || |||| |||||| || || |||||| ||| || | | |
Sbjct 14674712 ACATCGAAGGTGCCGCCGCCCAGATCAAAGATCAGCACATTCCGTTCACTGCCGCCCTGT 14674771
Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394
|| || || || || |||| || || || ||||| ||||| || || | || |||||
Sbjct 14674772 TTGTCCAGGCCGTAGGCAATGGCCGCCGCCGTTGGCTCATTGATGATGCGCAGCACATTG 14674831
Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454
|| || || || || ||||| || ||||| || || || ||||| || || || ||
Sbjct 14674832 AGTCCGGCTATGACGCCCGCATCCTTGGTGGCCTGCCTCTGCGAATCATTGAAGTAGGCG 14674891
Query 282455 GGAACAGTAATAACGGCATCTGT 282477
|| ||||| ||||||||||| ||
Sbjct 14674892 GGCACAGTGATAACGGCATCGGT 14674914
>seq518
Length=3401
Score = 95.1 bits (104), Expect = 9e-14
Identities = 123/169 (73%), Gaps = 1/169 (1%)
Strand=Plus/Plus
Query 637122 TATT-GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGAT 637180
|||| || || | |||||||||||| || || ||| |||||||| |||| |||||| | |
Sbjct 3071 TATTAGTTGACTTTTCTTCTCCAAACATCGCAAAACAAATGCATGTTGGTCATTTACGTT 3130
Query 637181 CAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATC 637240
| || || ||||| || || || |||||| | | ||| | ||| || ||| ||
Sbjct 3131 CCACCATAATTGGCGAGTCAATCTGTAGGCTTCTTGAATTTCTACAACATGACGTTATTC 3190
Query 637241 GTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 637289
| || |||||| | || ||||||||||| || || || ||| | || ||
Sbjct 3191 GCATCAATCATCTTGGGGATTGGGGAACGCAGTTTGGCATGCTCATAGC 3239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740474373630228
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |