Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 241 1e-57 seq3 96.9 3e-14 seq518 95.1 9e-14 >seq1 Length=29979347 Score = 241 bits (266), Expect = 1e-57 Identities = 944/1465 (64%), Gaps = 22/1465 (2%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 || || ||||| |||||||| |||||||| | || || || || ||||| |||||||| Sbjct 13815851 GCGGTGACATTCAGAATACCGTTGGCATCAATGTCGAAGGTCACCTCAATCTGAGGGACA 13815910 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | | || ||||| || || ||| | || | |||| |||||| || ||| Sbjct 13815911 CCGCGTGGTGCGGGTGGAATGCCCGACAACTCGAACTTGCCCAACAGATTATTGTCCTTA 13815970 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | || ||||| ||| | | |||||| || | | || || || || || Sbjct 13815971 GTCATGGCACGCTCACCTTCGTAGACTTGGATCAACACACCGGGCTGGTTGTCCGAGTAG 13816030 Query 281606 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 || || || ||||| | | || || || || ||||| | | || | | | Sbjct 13816031 GTGGTGAAGG-TCTGGGTCTGCTTTGTGGGGATGGTGGTGTTGCGCTTGATCAACACGCT 13816089 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||| | || ||||| || || | ||| || || || || |||||||| | || | | Sbjct 13816090 CATCACGCCGCCAGCGGTCTCGATACCCAGCGACAGGGGGGTGACATCGAGCAGCAACAG 13816149 Query 281725 ATTTTGAAGTTTTT-CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCAT 281783 || || | || | | | | | | ||||| |||| || || | |||||||||| Sbjct 13816150 ATCCTGCACTTCCTGCGACTTGTCGCCGTGCAAGA-TAGCAGCCTGGACGGCAGCACCAT 13816208 Query 281784 ATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-T 281842 | |||||||| ||||| || || | | | || || | || || ||||| | || | Sbjct 13816209 AGGCAACAGCCTCATCGGGGTTGATGGACTTGTTCAGCTCCTTGCCGTTGAACAGATCCT 13816268 Query 281843 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 281902 | || | | | ||||| || ||||| | || || || || || ||||| || || Sbjct 13816269 GCAATAGGCGCTGC-ACCTTGGGGATACGGGTGGAGCCACCGACCAACACAATATCGTGA 13816327 Query 281903 ACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCT 281962 | || || |||| ||| | ||| || | || || ||||| || | ||| Sbjct 13816328 ATGGCCGACTTGTCCAATTTAGCATCACGCAATGCCTTCTCCACGGGGTCCATGGT-GCT 13816386 Query 281963 -CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GAG-TGACATTATA 282018 | |||| || | || ||||| || ||| | |||| ||| || || | Sbjct 13816387 GCGGAACAGATCAGCGTTCAGCTCTTCAAAACGAGCGCGCGTAATCGAGGTG----TAGA 13816442 Query 282019 A-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 | || | || ||||||| ||||| | ||||| | | || || || || || || | Sbjct 13816443 AGTCGGTACCCTCGAACAGCGAATCGATCTCAATGCTCGCCTGGGTAGATGAGGAAAGAG 13816502 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--T 282135 ||| || ||||| ||||| || || | ||| | || | || ||| ||| | | Sbjct 13816503 TACGCTTTGCACGCTCACAGGCAGTGCGTAGACGACGCAGAGCAC--GCTTGTTGGTAGT 13816560 Query 282136 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 282195 || ||| | || | || | |||||| || | ||| | || || |||||||| || Sbjct 13816561 CAGATCCTTCTTGTGCTTGCGCTTGAACTCCTGCACAAAGTGAGTGACTAGACGATTGTC 13816620 Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255 ||||| ||||| ||||| | || | || | |||| | | || | ||| | || || Sbjct 13816621 GAAATCCTCACCACCCAAATGGGTGTCACCAGCAGTAGATTTGACCTCGAAGATGCCGTC 13816680 Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 |||| |||| || | |||||| || ||||| |||| ||| ||||| | ||||| Sbjct 13816681 ATCAATCGACAGAATGGAGACATCAAAAGTACCACCGCCCAAATCGAAAATCAACACATT 13816740 Query 282316 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 282375 ||| | || || || || ||||| || | || |||||||| || ||||| Sbjct 13816741 ACGTTCACCAACAGCCTTCTTGTCCAGGCCATAAGCGATGGCCGCAGCAGTCGGCTCATT 13816800 Query 282376 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 282435 ||||| | ||| || || | ||| || || | || ||||| || || || || | || Sbjct 13816801 GATAATACGCAATACGTTCAAACCGGCGATGGTGCCAGCATCCTTGGTAGCCTGACGCTG 13816860 Query 282436 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATA 282495 ||||||||| ||||| || || |||||||| ||||||| || || || || | || Sbjct 13816861 TGAATCGTTGAAATAGGCGGGCACAGTAATGACGGCATTGGTAACCGTCTTGCCCAGGTA 13816920 Query 282496 AGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATA 282555 || || || | ||||| || | || | ||| || || || | || || ||| | Sbjct 13816921 CGCCTCGGCGGTCTCCTTCATCTTGGTCAACACCATGGAGGAGATCTCCTC-GGGGAAGA 13816979 Query 282556 TTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 282614 | ||| |||| | || | || || | | || || | |||| |||| | Sbjct 13816980 AAGTCTTCTTCTCATCCTTGTACGTAACCTCGATCTTGGGCTTGCCATCAACGTTAACGA 13817039 Query 282615 CTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 282674 | | || ||||| | |||||||| || || || |||| || | | ||||| Sbjct 13817040 CCTCGAAAGGCCAGTGCTTCATATCAGACTGKACGGCCGCATCATCGAATTTGCGACCAA 13817099 Query 282675 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTG 282734 | | || || ||||| || ||||| | |||||| || | || | || | ||||| | Sbjct 13817100 TCAGACGCTTAGCATCGAAGATAGTTTGGGTTGGGTTCATGGCCACCTGGTTCTTGGCGG 13817159 Query 282735 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 282794 | || ||||||| | | || ||||| || || | |||||| ||||| || || ||||||| Sbjct 13817160 CGTCACCAATCAAACGCTCCGTCTCCGTGAAGGCAACATAAGATGGGGTGGTACGATTAC 13817219 Query 282795 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 282854 | ||||| || ||||| || ||||| || |||| || | ||||| || ||| | | Sbjct 13817220 CCTGATCGTTGGCAATGATCTCAACCTTGCCATGCTGGAACACACCCACGCAAGAGTAGG 13817279 Query 282855 TTGTTCCTAAATCAATACCAATAGC 282879 |||| || ||||||||||||| ||| Sbjct 13817280 TTGTGCCCAAATCAATACCAACAGC 13817304 Score = 111 bits (122), Expect = 1e-18 Identities = 211/306 (69%), Gaps = 11/306 (4%) Strand=Plus/Plus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || || ||||| || ||||| || || |||| | |||| |||| |||||| | ||| Sbjct 6720071 ACCAGCCGATTGTCGAAATCCTCGCCGCCCAGATGCGTATCACCTGCCGTAGCCTTCACT 6720130 Query 282242 TGGAAAAG---TCCATCTTCAA--GAGACAAAAGAGTAACATCATGGGTTCCACCACCCA 282296 | ||| || ||| || || | |||| | ||| || ||| ||| || || |||| Sbjct 6720131 TCGAACAGCGATCCCTCGTCGATGGAGAGTATGGAG--ACGTCAAAGGTGCCGCCGCCCA 6720188 Query 282297 TATCAAAAATAAGTACATTCATTTCTTTGTCTT--GGTTTTTATCAAGACCATACGCAAA 282354 ||| || || || ||||| | || | ||| | ||||| || || ||||| || | Sbjct 6720189 AATCGAAGATCAGCACATT--TCGCTCTCCCTTCAGATTTTTGTCCAGGCCATAGGCGAG 6720246 Query 282355 AGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGC 282414 ||||| || || || ||||| || || | || ||||| | ||| || || || || Sbjct 6720247 GGCAGCCGCCGTCGGCTCATTGATGATGCGCAGCACATTCAAACCGGCTATGGAGCCAGC 6720306 Query 282415 ATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 ||||||||| ||||| | || |||||||| || || || || || ||||| || ||||| Sbjct 6720307 ATCTTTAGTCGCTTGGCGCTGGGAATCGTTGAAGTACGCCGGCACCGTAATGACAGCATC 6720366 Query 282475 TGTTAC 282480 |||| Sbjct 6720367 CTTTAC 6720372 Score = 105 bits (116), Expect = 5e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 282722 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 282781 |||| ||| |||||||| ||||| || | ||||| || |||| | ||||| || || Sbjct 6721099 TGATTTTTAGCTGCATCGCCAATTAGGCGCTCTGTGTCGTTAAAGGCCACATACGAGGGC 6721158 Query 282782 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 282841 || || ||||| ||||||||||| |||||||| ||||||||| || ||||| ||||| Sbjct 6721159 GTCGTCCGATTGCCTTGATCATTGGCAATAATCTCAACTTTATTGTTCTGCCAAACACCC 6721218 Query 282842 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 || || | || || || | ||| |||||||| || Sbjct 6721219 ACGCAGGAGTAGGTGGTGCCCAGATCGATACCAATTGC 6721256 >seq3 Length=22052390 Score = 96.9 bits (106), Expect = 3e-14 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 ||||| ||| || || |||| |||||| || || |||||| ||| || | | | Sbjct 14674712 ACATCGAAGGTGCCGCCGCCCAGATCAAAGATCAGCACATTCCGTTCACTGCCGCCCTGT 14674771 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || || || || || |||| || || || ||||| ||||| || || | || ||||| Sbjct 14674772 TTGTCCAGGCCGTAGGCAATGGCCGCCGCCGTTGGCTCATTGATGATGCGCAGCACATTG 14674831 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 || || || || || ||||| || ||||| || || || ||||| || || || || Sbjct 14674832 AGTCCGGCTATGACGCCCGCATCCTTGGTGGCCTGCCTCTGCGAATCATTGAAGTAGGCG 14674891 Query 282455 GGAACAGTAATAACGGCATCTGT 282477 || ||||| ||||||||||| || Sbjct 14674892 GGCACAGTGATAACGGCATCGGT 14674914 >seq518 Length=3401 Score = 95.1 bits (104), Expect = 9e-14 Identities = 123/169 (73%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 637122 TATT-GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGAT 637180 |||| || || | |||||||||||| || || ||| |||||||| |||| |||||| | | Sbjct 3071 TATTAGTTGACTTTTCTTCTCCAAACATCGCAAAACAAATGCATGTTGGTCATTTACGTT 3130 Query 637181 CAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATC 637240 | || || ||||| || || || |||||| | | ||| | ||| || ||| || Sbjct 3131 CCACCATAATTGGCGAGTCAATCTGTAGGCTTCTTGAATTTCTACAACATGACGTTATTC 3190 Query 637241 GTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 637289 | || |||||| | || ||||||||||| || || || ||| | || || Sbjct 3191 GCATCAATCATCTTGGGGATTGGGGAACGCAGTTTGGCATGCTCATAGC 3239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740474373630228