Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq2 129 6e-25
seq3 93.3 4e-14
>seq2
Length=27840087
Score = 129 bits (142), Expect = 6e-25
Identities = 488/756 (65%), Gaps = 21/756 (3%)
Strand=Plus/Minus
Query 150713 AAGTAGCGGTTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTACTG 150772
|||| | |||| || || ||||||||||| |||||||| ||||| | | ||
Sbjct 27784972 AAGTGGTGGTTCACTACCTGAAATTCGCCAGACAAAACTCGTCTTGTGTAAATGTT---- 27784917
Query 150773 TGAA----ACGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGG 150828
|||| | || || || ||||| || ||| | |||||| || || | || || ||
Sbjct 27784916 TGAAGTATAAGGCTCGAACGACTCATTATTGCCCAATATTTGCGCAGTGGATGCTGTAGG 27784857
Query 150829 CATGTACGCCACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTG 150888
|||| || | || || ||||| | | |||| || |||| | |||| |
Sbjct 27784856 CATGGGAGCGATGAGTAAAGAATTTCTGACACCGTGTTGCGCTATAGATTTTTTAAGAGC 27784797
Query 150889 TGACCAGTCCCATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTC 150948
||| ||||| | || ||| | ||||||| ||| || ||||| |||||||
Sbjct 27784796 ATTCCAATCCCAAAGATCTGTTGGTGATTTTTTCCACATATCATACTGCAAAATTCCTTT 27784737
Query 150949 GCTCGCTTTGCTACCGGCAAACGTGCTATAAGGCTCA-CTAACAGATGCCAGTTCGTAAC 151007
||| || || || || | || ||| || || || | || || | ||| | |
Sbjct 27784736 GCTTACTGGACTGCCAACATAAGTCTCATATGGTCCATCTCTCTGA-GCTAATTCACAGC 27784678
Query 151008 TGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAG 151067
|||| || | || ||| || | |||||| ||| || | ||| |||| || ||
Sbjct 27784677 TGGCTTCCAAAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAATAAAAATGCTT 27784618
Query 151068 CATCGCTCACGTACGGTATGC-GCAACATAACAAATGCATCGGCCAAACCTTGAATGCCT 151126
|| || |||| || || | ||| | | ||||| || || || ||||| | ||
Sbjct 27784617 CACGACTTTCGTA-GGAATACCGCATTAATATTAATGCGTCCGCAAACCCTTGGACTCCA 27784559
Query 151127 ATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTG 151186
|| || || ||||| || || | ||| |||||||| || | | ||||||| ||||
Sbjct 27784558 ATACCAATAGGACGGTGACGTAAATTTGATTTTTTAGCTTCTGGCAAAGGGTAGTAATTT 27784499
Query 151187 CGATCAATAATTTTATTCAAACTATTCACTAC-ATGTTTG--ACCACAGTGTGCAATAGT 151243
|||||| |||||||| || | ||| || || || | || | | || |
Sbjct 27784498 ATATCAATTATTTTATTTAAGTTTTTCGTAACGATTTTAGTTACTTCTTTAAGCTTT--- 27784442
Query 151244 TGAAAATCAAAAG---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTA 151300
| ||| ||| ||| | || | | | | | |||| | || || ||||| | ||||
Sbjct 27784441 TTAAAGTCATAAGATTTCTCCTGCGTCACAAACATATTAAGTGCGATAGACGCCAAATTA 27784382
Query 151301 CATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCAT 151360
|| || || |||| || || || |||||| |||||||| | |||| ||| ||||||
Sbjct 27784381 CACACAGCTATTTCATCTGGTGCCGAATATTCAACTATTTCTGTGCACAGATTACTGCAT 27784322
Query 151361 TTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATG 151420
||||| ||| ||| ||| |||||||| | ||| |||| |||||| ||||||||
Sbjct 27784321 TTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAGTCCTTAAATAACATG 27784262
Query 151421 TACGGTGTGCCGGTTTCGGCTTGAATTTCTATAATG 151456
|| || || || || || ||||| ||| || |||
Sbjct 27784261 TAAGGAGTACCAGTCTCTACTTGAGATTCAATGATG 27784226
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274
|| || |||||||| |||||||| ||| | |||| ||||| | ||| || |||
Sbjct 14207476 GTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAATTGCTTGCCA 14207535
Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334
||| |||| ||||| |||||||| ||||| || ||||||||||| || || |||
Sbjct 14207536 GCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTG 14207595
Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394
| | || | || || | ||||| || |||| ||| | ||||| || || | |||
Sbjct 14207596 ACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTTAGGGTT 14207655
Query 137395 TTTACGAATATTTGCAT 137411
|| || || || |||||
Sbjct 14207656 TTAACAAAGATCTGCAT 14207672
Score = 86.0 bits (94), Expect = 6e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243
||| || || | ||| | || || || | || || || || || |||||||| |||
Sbjct 185598 GCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGA 185539
Query 137244 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302
|| |||| || | || || || || || || || |||||||||| |||||||| || |
Sbjct 185538 CAGAGTGCGTCCA-TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTG 185480
Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362
| || || |||||||| || || || | | || | ||||| | ||| || |
Sbjct 185479 GGATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGA 185420
Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
| || | ||| | ||||||||||| | ||||| ||||| ||||||||
Sbjct 185419 CCTCCAAAGTAATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 185371
>seq3
Length=22052390
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| || || | ||||| || ||||||| ||||| || ||||| |||||||||||| |
Sbjct 1975459 CCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGAC 1975400
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| |||| ||||| ||||| || || || |||||||||| |||||||| || ||
Sbjct 1975399 AGGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1975340
Query 137305 ATGCCTTCTTTGTC 137318
|| ||||| |||||
Sbjct 1975339 ATACCTTCCTTGTC 1975326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488524592589600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |