Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq2 147 4e-30
seq3 145 1e-29
seq6 140 6e-28
>seq2
Length=27840087
Score = 147 bits (162), Expect = 4e-30
Identities = 162/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || ||||||| || || ||||| || || || || || || ||| | | |||
Sbjct 14207458 CGGAGCACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCA 14207517
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| | ||| || |||||||||||||| | || ||||||||||| |||||||| ||
Sbjct 14207518 TCTTCCAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 14207577
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || ||||| ||||| ||||| || || ||||| ||||| || || | ||| ||
Sbjct 14207578 TCCTGGATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATG 14207637
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
||||| || || | || || ||||| |||||||||
Sbjct 14207638 GTCTTACCCGTTAGGGTTTTAACAAAGATCTGCATT 14207673
>seq3
Length=22052390
Score = 145 bits (160), Expect = 1e-29
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | || ||| || || | || || || || || ||||| ||||| || ||||
Sbjct 1975173 TACCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAG 1975114
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| | | | || ||||| ||||| || || || ||||| || | || |||||||| |
Sbjct 1975113 ACAAGGTGCGGCCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTG 1975054
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| ||||| ||||||||||||||||| || || || || ||||| ||||| ||| || |
Sbjct 1975053 GAATTCCCTCCTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAA 1974994
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
| ||||| || || ||||| || ||||| || || || || |||||||||
Sbjct 1974993 CCTCCAAGGTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCATT 1974944
>seq6
Length=26536676
Score = 140 bits (154), Expect = 6e-28
Identities = 177/243 (73%), Gaps = 1/243 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || | || ||| || || | || || || || || ||||| || || || || ||
Sbjct 9462222 CCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTRTAGTCGGAC 9462281
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| | | || || || || || || ||||| ||||| || | || |||||||| ||
Sbjct 9462282 AGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGA 9462341
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| || ||||| ||||| ||||| || || ||||||||||| || || || || ||
Sbjct 9462342 ATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTGTCCGAGGGCTCAACC 9462401
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTTTC 82823
|||||||| || |||||||| ||||| ||||| || || ||||||| |||| |||||
Sbjct 9462402 TCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCA-TATTTCTCTTTTC 9462460
Query 82824 TAC 82826
|||
Sbjct 9462461 TAC 9462463
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981787221837342
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |