Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6 131 2e-25 seq2 125 7e-24 >seq6 Length=26536676 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| || ||| | | | ||||| ||||||||||| Sbjct 9462024 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCA-TCCTCCAGCTGCTTGCC 9462082 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||| || || || || || |||||||| |||||| ||| Sbjct 9462083 AGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTT 9462142 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | |||||| || || | ||||| ||||||||| |||| ||| Sbjct 9462143 AACATTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTTTTGCCAGTCAAAGT 9462202 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 9462203 CTTGACGAAGATCTGCATG 9462221 Score = 116 bits (128), Expect = 4e-21 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || || || ||| || ||| | | | ||||| |||| Sbjct 9462245 ATGAAGGGTCGACTCCTTCTGGATGTTRTAGTCGGACAGAGTGCGTCCA-TCCTCCAGCT 9462303 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || || |||||||| || || || || || |||||||| ||||| Sbjct 9462304 GCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCT 9462363 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | |||| ||||| | |||||| || || | |||| ||| ||||| | Sbjct 9462364 TGGCCTTAACATTTTCAATGGTGTCCGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAG 9462423 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||| || ||||| |||||||| Sbjct 9462424 TCAAAGTCTTGACGAAGATCTGCAT 9462448 >seq2 Length=27840087 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| || ||| | | | ||||| ||||||||||| Sbjct 185567 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCA-TCCTCCAGCTGCTTGCC 185509 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||| || || ||||| || || ||||| |||||| ||| Sbjct 185508 GGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCCTT 185449 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| | |||||| || || | || | ||| |||||||| ||||| Sbjct 185448 GACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAAGTAATGGTCTTGCCGGTGAGAGT 185389 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| || ||||| Sbjct 185388 TTTAACGAAGATTTGCAT 185371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483401596108720