Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2 190 5e-43 >seq2 Length=27840087 Score = 190 bits (210), Expect = 5e-43 Identities = 565/864 (65%), Gaps = 17/864 (2%) Strand=Plus/Plus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 |||| ||||| ||||| || ||||| || | ||||| || | ||||| | || Sbjct 27783481 ACTACTTTGGATTCAAGACACTTGAGCGGTCGTATTTGCTAAAAATAAATGGAAAAATAG 27783540 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 ||| | || || || || | | ||||| || || ||||| ||||| | |||||| Sbjct 27783541 CAGAAAGACCACAGCATTTGCTAATGCGTGTCGCCATAGGTATACATGGCGAAGATATTG 27783600 Query 110422 AAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTA 110481 | ||| ||||| || || | || | | || |||||| | || | Sbjct 27783601 ATTCTGCAGTTGAAACCTACAATTTGCTATCTGAGCGTTTTTTTACTCATGCATCACCAA 27783660 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTA 110541 | || ||| |||| || ||| | ||||||| |||| || |||||| || || Sbjct 27783661 CTCTTTTTGCTGCAGCCACAAATCGTCCACAATTGTCTTCATGTTTTCTTTTAACTATAG 27783720 Query 110542 ACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAA 110601 |||||| |||||||| |||| | | | || || || || | || || || Sbjct 27783721 TGTCTGATTCAATTGAAGGGATTTTTAAATCAGTTGAACAATGCGCAATGATATCAAAGT 27783780 Query 110602 ACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCA--AATATC-G 110658 | || || ||||| || | ||||| |||||| | ||||| | ||| | | Sbjct 27783781 CGGCAGGTGGCATTGGACTTAATGTTCACTGTATTCGAGCTAAAGGCACCTCAATTTGTG 27783840 Query 110659 CAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG 110718 ||| ||| || |||||| |||| | || |||||||||||||| || || | | Sbjct 27783841 GAAC---GAACGGCACTTCAAATGGATTAGTACCAATGTTAAGAGTATTTAATAATGTCG 27783897 Query 110719 CAAAATATGTGAATCAAGG---TGGTAAGAGAAATGGCTCATTTGCTATCTATCTCGAAC 110775 | ||||| |||| || |||||| ||| ||| |||||||||| ||| | || | Sbjct 27783898 CGCGTTATGTTGATCAGGGCGGTGGTAAAAGACCTGGAGCATTTGCTATATATTTGGAGC 27783957 Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAAC 110835 ||||||| |||||| | || ||||| || || ||| |||||| ||| || || | Sbjct 27783958 CTTGGCACTCAGATGTCTTCGAATTTTTGGACCTTAAAAAAAATACTGGAAAGGAGGAGC 27784017 Query 110836 AAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTC 110895 | | ||||| ||| | |||| |||| ||||||| | ||| | || |||||||||||| Sbjct 27784018 ATCGTGCACGCGATCTTTTTTTTGCATTGTGGATACCTGATCTTTTTATGAAACGTGTTG 27784077 Query 110896 AAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTAT 110955 ||| |||| ||||| | |||||||| ||| | ||||| || | ||||| | Sbjct 27784078 AAGCTAATGAAGACTGGTCATTAATGTGTCCACATAAATGCCCTGGCCTCCCAGATGTTT 27784137 Query 110956 ATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG-CAAGTTTCGCAAA 111014 || |||| |||||| |||| || ||||||||| ||| || | || || || Sbjct 27784138 GGGGTGAAGATTTTGAAAACCTCTATATCAAATATGAACGAGAGGGACGAG---CG-AAT 27784193 Query 111015 CAA---ATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGA 111071 | | ||| |||||| |||||||| ||| ||||||| ||||| || ||||| Sbjct 27784194 CGAGTTATTAAGGCTCAATCTCTTTGGTTTGCCATCATTGAATCTCAAGTAGAGACTGGT 27784253 Query 111072 ACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGA 111131 |||||||| || || | ||| || | ||| | ||| || ||| ||| | ||| Sbjct 27784254 ACTCCTTACATGTTATTTAAGGACTCTTGTAACAGAAAAAGCAACCAACAAAATGTTGGA 27784313 Query 111132 ACAATTAAGTCTAGTAATTTGTGC 111155 || || || | |||||| ||||| Sbjct 27784314 ACTATAAAATGCAGTAATCTGTGC 27784337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186764475208058