Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq2 125 5e-24
seq3 105 4e-18
seq6 102 5e-17
>seq2
Length=27840087
Score = 125 bits (138), Expect = 5e-24
Identities = 169/233 (73%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||| | | || | |||||| || | || ||||||||| |||||||| ||||
Sbjct 14207444 CACCACCACGAAGGCGGAGCACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGG 14207503
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| || ||||| | || |||||||| || || ||||| || | ||||||||||||| | |
Sbjct 14207504 AAAGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAG 14207563
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | ||||||||||| || || | || |||| || | ||| || | |||
Sbjct 14207564 GAATTCCTTCTTTGTCCTGGATCTT-GGCTTTGACATTCTCGATGGTATCCGACGGTTCG 14207622
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752
|| |||| ||||| || ||||| |||| ||||| |||||||||||||| ||
Sbjct 14207623 ACCTCAAGAGTGATGGTCTTACCCGTTAGGGTTTTAACAAAGATCTGCATTGT 14207675
Score = 98.7 bits (108), Expect = 7e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || ||| | |||||| || | |||| ||| || || |||||||| |||||
Sbjct 185597 CCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 185538
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| |||||| | || |||| || || ||||| || |||| ||||||||||||| | ||
Sbjct 185537 AGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGG 185478
Query 33643 ACACCTTCTTTGTC 33656
| || ||||||||
Sbjct 185477 ATTCCCTCTTTGTC 185464
>seq3
Length=22052390
Score = 105 bits (116), Expect = 4e-18
Identities = 106/138 (77%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 33519 GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATC 33578
|| ||| || | || ||| | |||||||| || || ||| ||||| |||||||||||
Sbjct 1975463 GTAACCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATC 1975404
Query 33579 GGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTG 33638
||| || ||||| | || |||| ||| || ||||| || |||| ||||||||||||| |
Sbjct 1975403 GGACAGGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGG 1975344
Query 33639 CGGCACACCTTCTTTGTC 33656
|| | |||||| |||||
Sbjct 1975343 GGGAATACCTTCCTTGTC 1975326
>seq6
Length=26536676
Score = 102 bits (112), Expect = 5e-17
Identities = 174/249 (70%), Gaps = 5/249 (2%)
Strand=Plus/Plus
Query 33502 CATATACAAATAAAATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCT 33561
||| | ||||| ||| | |||||| | | ||| | |||||| || | ||| |||
Sbjct 9461976 CATTTTCAAATTTAATTGCCACCACGT---AGACGGAGCACCAAGTGCAAAGTAGACTCC 9462032
Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621
|| || |||||||| ||||| || |||||| | || |||| || || || || || |||
Sbjct 9462033 TTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATC 9462092
Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681
| ||||||||||||| | || | ||| || ||||| || || | | ||||| ||
Sbjct 9462093 AGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTT-GGCCTTAACATTCTC 9462151
Query 33682 -ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740
| |||||| | || || || | ||||| ||||| || || || || || || ||
Sbjct 9462152 AATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTGACGAA 9462211
Query 33741 GATCTGCAT 33749
|||||||||
Sbjct 9462212 GATCTGCAT 9462220
Score = 93.3 bits (102), Expect = 3e-14
Identities = 161/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || ||| | |||| ||| || || ||| || || ||||| || |||||
Sbjct 9462222 CCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTRTAGTCGGAC 9462281
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| |||||| | || |||| || || || || || |||| ||||||||||||| | ||
Sbjct 9462282 AGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGA 9462341
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||| || ||||| || || | | ||||| || | |||||| | || ||
Sbjct 9462342 ATACCCTCCTTGTCTTGGATCTT-GGCCTTAACATTTTCAATGGTGTCCGAGGGCTCAAC 9462400
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753
|| | ||||| || || || || || || || || |||||||||||| ||
Sbjct 9462401 CTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATATTT 9462452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328691268677760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |