Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2 125 5e-24 seq3 105 4e-18 seq6 102 5e-17 >seq2 Length=27840087 Score = 125 bits (138), Expect = 5e-24 Identities = 169/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | || | |||||| || | || ||||||||| |||||||| |||| Sbjct 14207444 CACCACCACGAAGGCGGAGCACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGG 14207503 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| | || |||||||| || || ||||| || | ||||||||||||| | | Sbjct 14207504 AAAGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAG 14207563 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||||||||| || || | || |||| || | ||| || | ||| Sbjct 14207564 GAATTCCTTCTTTGTCCTGGATCTT-GGCTTTGACATTCTCGATGGTATCCGACGGTTCG 14207622 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || |||| ||||| || ||||| |||| ||||| |||||||||||||| || Sbjct 14207623 ACCTCAAGAGTGATGGTCTTACCCGTTAGGGTTTTAACAAAGATCTGCATTGT 14207675 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||||| || | |||| ||| || || |||||||| ||||| Sbjct 185597 CCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 185538 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || |||| || || ||||| || |||| ||||||||||||| | || Sbjct 185537 AGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGG 185478 Query 33643 ACACCTTCTTTGTC 33656 | || |||||||| Sbjct 185477 ATTCCCTCTTTGTC 185464 >seq3 Length=22052390 Score = 105 bits (116), Expect = 4e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 33519 GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATC 33578 || ||| || | || ||| | |||||||| || || ||| ||||| ||||||||||| Sbjct 1975463 GTAACCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATC 1975404 Query 33579 GGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTG 33638 ||| || ||||| | || |||| ||| || ||||| || |||| ||||||||||||| | Sbjct 1975403 GGACAGGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGG 1975344 Query 33639 CGGCACACCTTCTTTGTC 33656 || | |||||| ||||| Sbjct 1975343 GGGAATACCTTCCTTGTC 1975326 >seq6 Length=26536676 Score = 102 bits (112), Expect = 5e-17 Identities = 174/249 (70%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 33502 CATATACAAATAAAATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCT 33561 ||| | ||||| ||| | |||||| | | ||| | |||||| || | ||| ||| Sbjct 9461976 CATTTTCAAATTTAATTGCCACCACGT---AGACGGAGCACCAAGTGCAAAGTAGACTCC 9462032 Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621 || || |||||||| ||||| || |||||| | || |||| || || || || || ||| Sbjct 9462033 TTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATC 9462092 Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 | ||||||||||||| | || | ||| || ||||| || || | | ||||| || Sbjct 9462093 AGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTT-GGCCTTAACATTCTC 9462151 Query 33682 -ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | |||||| | || || || | ||||| ||||| || || || || || || || Sbjct 9462152 AATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTGACGAA 9462211 Query 33741 GATCTGCAT 33749 ||||||||| Sbjct 9462212 GATCTGCAT 9462220 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||| ||| || || ||| || || ||||| || ||||| Sbjct 9462222 CCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTRTAGTCGGAC 9462281 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || |||| || || || || || |||| ||||||||||||| | || Sbjct 9462282 AGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGA 9462341 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| || || | | ||||| || | |||||| | || || Sbjct 9462342 ATACCCTCCTTGTCTTGGATCTT-GGCCTTAACATTTTCAATGGTGTCCGAGGGCTCAAC 9462400 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753 || | ||||| || || || || || || || || |||||||||||| || Sbjct 9462401 CTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATATTT 9462452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328691268677760