Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2 107 5e-18 seq6 95.1 3e-14 seq3 93.3 1e-13 >seq2 Length=27840087 Score = 107 bits (118), Expect = 5e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || || |||||||| || || |||||||| |||| Sbjct 185386 AAAACTCTCACCGGCAAGACCATTACTTTGGAGGTCGAGCCCTCTGACACCATCGAGAAT 185445 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| ||||| ||||| || || || | || |||||| Sbjct 185446 GTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAGCAGCGTCTGATCTTC 185505 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| |||||| | ||| || |||| |||||| | ||||| ||||| Sbjct 185506 GCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAACATTCAGAAGGAGTCC 185565 Query 206365 ACTCTTCAC 206373 ||| | ||| Sbjct 185566 ACTTTGCAC 185574 Score = 87.8 bits (96), Expect = 4e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || || || |||||| | || || ||| || || Sbjct 14207669 CAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCGGAT 14207610 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| || ||| || || |||||||||||| || || || Sbjct 14207609 ACCATCGAGAATGTCAAAGCCAA-GATCCAGGACAAAGAAGGAATTCCTCCAGATCAGCA 14207551 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || ||||| || || ||||| ||||||||||| | ||| | |||| |||||| | Sbjct 14207550 GCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTACAACAT 14207491 Query 206352 CCAGAAAGAGTCTAC 206366 ||| |||||||| || Sbjct 14207490 CCAAAAAGAGTCAAC 14207476 >seq6 Length=26536676 Score = 95.1 bits (104), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || ||||||||||| || || || ||| Sbjct 9462445 CAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCCTCGGAC 9462386 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| ||||| || || || ||| || || || Sbjct 9462385 ACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAG 9462326 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || |||||| |||| |||||| | ||| || |||| || ||| || Sbjct 9462325 CGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTAYAACATC 9462266 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||| || || Sbjct 9462265 CAGAAGGAGTCGACCCTTCATCTGGT 9462240 >seq3 Length=22052390 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || ||||| || ||||| ||||| || || ||| || || | || Sbjct 1974960 AAAACTTTGACGGGAAAGACCATCACCTTGGAGGTTGAGCCTTCCGATACCATTGAGAAC 1975019 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| || || |||||| || || || | || |||||| Sbjct 1975020 GTCAAGGCCAAGATTCAAGATAAGGAGGGAATTCCACCAGATCAGCAGCGTCTGATCTTC 1975079 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| |||||||||| | || ||| | || ||||| ||||||| ||||| Sbjct 1975080 GCCGGCAAGCAACTGGAAGATGGCCGCACCTTGTCTGACTACAATATCCAGAAGGAGTCG 1975139 Query 206365 ACTCTTCACCTTGT 206378 || ||||| || || Sbjct 1975140 ACCCTTCATCTGGT 1975153 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || || ||||| || ||||| ||||||| ||| ||||||| ||| || | ||||||||| Sbjct 1975153 ACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAGGTGCGGCCATCTTCC 1975094 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || ||||| ||||||||||| || || || ||| Sbjct 1975093 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGA 1975061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181772678472938