Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq2 107 5e-18
seq6 95.1 3e-14
seq3 93.3 1e-13
>seq2
Length=27840087
Score = 107 bits (118), Expect = 5e-18
Identities = 137/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| ||||| || || || || |||||||| || || |||||||| ||||
Sbjct 185386 AAAACTCTCACCGGCAAGACCATTACTTTGGAGGTCGAGCCCTCTGACACCATCGAGAAT 185445
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| ||||| ||||| ||||| || || || | || ||||||
Sbjct 185446 GTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAGCAGCGTCTGATCTTC 185505
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| |||| |||||| | ||| || |||| |||||| | ||||| |||||
Sbjct 185506 GCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAACATTCAGAAGGAGTCC 185565
Query 206365 ACTCTTCAC 206373
||| | |||
Sbjct 185566 ACTTTGCAC 185574
Score = 87.8 bits (96), Expect = 4e-12
Identities = 138/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||||| || || || || || |||||| | || || ||| || ||
Sbjct 14207669 CAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCGGAT 14207610
Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| |||| || ||||| || ||| || || |||||||||||| || || ||
Sbjct 14207609 ACCATCGAGAATGTCAAAGCCAA-GATCCAGGACAAAGAAGGAATTCCTCCAGATCAGCA 14207551
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
| || ||||| || || ||||| ||||||||||| | ||| | |||| |||||| |
Sbjct 14207550 GCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTACAACAT 14207491
Query 206352 CCAGAAAGAGTCTAC 206366
||| |||||||| ||
Sbjct 14207490 CCAAAAAGAGTCAAC 14207476
>seq6
Length=26536676
Score = 95.1 bits (104), Expect = 3e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || | || || || || ||||||||||| || || || |||
Sbjct 9462445 CAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCCTCGGAC 9462386
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | ||| || ||| ||||| ||||| || || || ||| || || ||
Sbjct 9462385 ACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAG 9462326
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || |||||||| || |||||| |||| |||||| | ||| || |||| || ||| ||
Sbjct 9462325 CGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTAYAACATC 9462266
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| ||||| || ||||| || ||
Sbjct 9462265 CAGAAGGAGTCGACCCTTCATCTGGT 9462240
>seq3
Length=22052390
Score = 93.3 bits (102), Expect = 1e-13
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| | || ||||| || ||||| ||||| || || ||| || || | ||
Sbjct 1974960 AAAACTTTGACGGGAAAGACCATCACCTTGGAGGTTGAGCCTTCCGATACCATTGAGAAC 1975019
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||||||||| || || |||||| || || || | || ||||||
Sbjct 1975020 GTCAAGGCCAAGATTCAAGATAAGGAGGGAATTCCACCAGATCAGCAGCGTCTGATCTTC 1975079
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| ||||| |||||||||| | || ||| | || ||||| ||||||| |||||
Sbjct 1975080 GCCGGCAAGCAACTGGAAGATGGCCGCACCTTGTCTGACTACAATATCCAGAAGGAGTCG 1975139
Query 206365 ACTCTTCACCTTGT 206378
|| ||||| || ||
Sbjct 1975140 ACCCTTCATCTGGT 1975153
Score = 87.8 bits (96), Expect = 4e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823
|| || ||||| || ||||| ||||||| ||| ||||||| ||| || | |||||||||
Sbjct 1975153 ACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAGGTGCGGCCATCTTCC 1975094
Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
|| ||||| ||||||||||| || || || |||
Sbjct 1975093 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGA 1975061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181772678472938
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |