Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq2 141 9e-29
seq3 93.3 4e-14
>seq2
Length=27840087
Score = 141 bits (156), Expect = 9e-29
Identities = 491/755 (65%), Gaps = 27/755 (4%)
Strand=Plus/Minus
Query 146890 TGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAA 146949
|| || || || ||||| ||||| | || || ||||| || | || ||| ||
Sbjct 27784966 TGGTTCACTACCTGAAATTCGCCAGACAAAACTCGTCTTGTGTAAATGTTTGAAGTATAA 27784907
Query 146950 GGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCC 147009
||||| || |||||||||||||| |||||||| || |||| ||| ||||||||| ||
Sbjct 27784906 GGCTCGAACGACTCATTATTGCCCAATATTTGCGCAGTGGATGCTGTAGGCATGGGAGCG 27784847
Query 147010 ACCAACAATGAATTTCGCAGACCGTA---CGC-ACGGATGTTGTCCTTCAAAGTTTGCCA 147065
| | || ||||||| | ||||| ||| | ||| || || | || | |||
Sbjct 27784846 ATGAGTAAAGAATTTCTGACACCGTGTTGCGCTATAGATTTT----TTAAGAGCATTCCA 27784791
Query 147066 GTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGC 147125
||||| | | || | |||||||| || ||||| | | |||| || |
Sbjct 27784790 ATCCCAAAGATCTGTTGGTGATTTTTTCCACATATCATACTGCAAAATTCCTTTGCTTAC 27784731
Query 147126 GGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTC 147185
||||||||| | | || || ||| || | ||| || ||||||||||| || ||
Sbjct 27784730 TGGACTGCCAACATAAGTCTCATATGGTCCATCTCTCTGAGCTAATTCACAGCTGGCTTC 27784671
Query 147186 GAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCT 147245
| |||||||||||||| |||||| || || | |||| | ||||| ||
Sbjct 27784670 CAAAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAATAAAAATGCTTCACGACT 27784611
Query 147246 CTCGTAAGGCATAC-GCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGA 147304
||||| || |||| ||| | | || || || || || || |||| || | || |
Sbjct 27784610 TTCGTA-GGAATACCGCATTAATATTAATGCGTCCGCAAACCCTTGGACTCCAATACCAA 27784552
Query 147305 TAGGTCGATGCT-----TTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCG 147359
|||| || || ||| || | ||||| | || | ||| |||| ||
Sbjct 27784551 TAGGACGGTGACGTAAATTTGATTTTTTAGCTTC----TGGCAAAGGG-TAGTAATTTAT 27784497
Query 147360 ATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAA 147419
|||||| || || || | ||| | || | |||||||| | ||| || || | ||
Sbjct 27784496 ATCAATTATTTTATTTAAGTTTTTCGTAACGATTTTAGTTACTTCTTTAAGCTTTTTAAA 27784437
Query 147420 ATCATAAG-TCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGC 147478
||||||| | | || || ||| || ||| | ||||||||||||| ||| |
Sbjct 27784436 GTCATAAGATTTCTCCTGCGTCACAAACATATTAAGT----GCGATAGACGCCAAATTAC 27784381
Query 147479 AGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCAT 147537
| || || | || || || | || || | || ||||| | |||||| || ||||||
Sbjct 27784380 ACACAGCTATTTCATCTGGTGCCGAA-TATTCAACTATTTCTGTGCACAGATTACTGCAT 27784322
Query 147538 TTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATG 147597
||||| ||| | |||||| || |||||||| | || || | ||| || || | ||||
Sbjct 27784321 TTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAGTCCTTAAATAACATG 27784262
Query 147598 TACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT 147632
|| || || ||||| ||||| | ||||| |||
Sbjct 27784261 TAAGGAGTACCAGTCTCTACTTGAGATTCAATGAT 27784227
Score = 104 bits (114), Expect = 2e-17
Identities = 156/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||| | ||| | ||||| || | | ||||||||||||| |||||||||||| | ||
Sbjct 14207451 ACGAAGGCGGAGCACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGT 14207510
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| |||||| | || || || | | ||||||||||||| ||||||||||| || ||
Sbjct 14207511 GCGACCATCTTCCAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCC 14207570
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|||||| || || || ||| | | || | ||||| | ||| || || || |
Sbjct 14207571 TTCTTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAG 14207630
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | || ||||| || || ||||| | || ||||||||
Sbjct 14207631 AGTGATGGTCTTACCCGTTAGGGTTTTAACAAAGATCTGCAT 14207672
>seq3
Length=22052390
Score = 93.3 bits (102), Expect = 4e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||||| |||| |||||||| | | | ||||| |||||||||||||| ||| || |||
Sbjct 1975454 ACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAGGGT 1975395
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| |||||| || || || |||| |||| |||||||| |||||||| || || ||
Sbjct 1975394 GCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATACC 1975335
Query 132022 TTCTTTATC 132030
||| || ||
Sbjct 1975334 TTCCTTGTC 1975326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476592266620080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |