Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2 141 9e-29 seq3 93.3 4e-14 >seq2 Length=27840087 Score = 141 bits (156), Expect = 9e-29 Identities = 491/755 (65%), Gaps = 27/755 (4%) Strand=Plus/Minus Query 146890 TGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAA 146949 || || || || ||||| ||||| | || || ||||| || | || ||| || Sbjct 27784966 TGGTTCACTACCTGAAATTCGCCAGACAAAACTCGTCTTGTGTAAATGTTTGAAGTATAA 27784907 Query 146950 GGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCC 147009 ||||| || |||||||||||||| |||||||| || |||| ||| ||||||||| || Sbjct 27784906 GGCTCGAACGACTCATTATTGCCCAATATTTGCGCAGTGGATGCTGTAGGCATGGGAGCG 27784847 Query 147010 ACCAACAATGAATTTCGCAGACCGTA---CGC-ACGGATGTTGTCCTTCAAAGTTTGCCA 147065 | | || ||||||| | ||||| ||| | ||| || || | || | ||| Sbjct 27784846 ATGAGTAAAGAATTTCTGACACCGTGTTGCGCTATAGATTTT----TTAAGAGCATTCCA 27784791 Query 147066 GTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGC 147125 ||||| | | || | |||||||| || ||||| | | |||| || | Sbjct 27784790 ATCCCAAAGATCTGTTGGTGATTTTTTCCACATATCATACTGCAAAATTCCTTTGCTTAC 27784731 Query 147126 GGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTC 147185 ||||||||| | | || || ||| || | ||| || ||||||||||| || || Sbjct 27784730 TGGACTGCCAACATAAGTCTCATATGGTCCATCTCTCTGAGCTAATTCACAGCTGGCTTC 27784671 Query 147186 GAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCT 147245 | |||||||||||||| |||||| || || | |||| | ||||| || Sbjct 27784670 CAAAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAATAAAAATGCTTCACGACT 27784611 Query 147246 CTCGTAAGGCATAC-GCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGA 147304 ||||| || |||| ||| | | || || || || || || |||| || | || | Sbjct 27784610 TTCGTA-GGAATACCGCATTAATATTAATGCGTCCGCAAACCCTTGGACTCCAATACCAA 27784552 Query 147305 TAGGTCGATGCT-----TTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCG 147359 |||| || || ||| || | ||||| | || | ||| |||| || Sbjct 27784551 TAGGACGGTGACGTAAATTTGATTTTTTAGCTTC----TGGCAAAGGG-TAGTAATTTAT 27784497 Query 147360 ATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAA 147419 |||||| || || || | ||| | || | |||||||| | ||| || || | || Sbjct 27784496 ATCAATTATTTTATTTAAGTTTTTCGTAACGATTTTAGTTACTTCTTTAAGCTTTTTAAA 27784437 Query 147420 ATCATAAG-TCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGC 147478 ||||||| | | || || ||| || ||| | ||||||||||||| ||| | Sbjct 27784436 GTCATAAGATTTCTCCTGCGTCACAAACATATTAAGT----GCGATAGACGCCAAATTAC 27784381 Query 147479 AGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCAT 147537 | || || | || || || | || || | || ||||| | |||||| || |||||| Sbjct 27784380 ACACAGCTATTTCATCTGGTGCCGAA-TATTCAACTATTTCTGTGCACAGATTACTGCAT 27784322 Query 147538 TTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATG 147597 ||||| ||| | |||||| || |||||||| | || || | ||| || || | |||| Sbjct 27784321 TTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAGTCCTTAAATAACATG 27784262 Query 147598 TACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT 147632 || || || ||||| ||||| | ||||| ||| Sbjct 27784261 TAAGGAGTACCAGTCTCTACTTGAGATTCAATGAT 27784227 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | ||||| || | | ||||||||||||| |||||||||||| | || Sbjct 14207451 ACGAAGGCGGAGCACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGT 14207510 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| | || || || | | ||||||||||||| ||||||||||| || || Sbjct 14207511 GCGACCATCTTCCAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCC 14207570 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || || || ||| | | || | ||||| | ||| || || || | Sbjct 14207571 TTCTTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAG 14207630 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || ||||| || || ||||| | || |||||||| Sbjct 14207631 AGTGATGGTCTTACCCGTTAGGGTTTTAACAAAGATCTGCAT 14207672 >seq3 Length=22052390 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||||||| | | | ||||| |||||||||||||| ||| || ||| Sbjct 1975454 ACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAGGGT 1975395 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| || || || |||| |||| |||||||| |||||||| || || || Sbjct 1975394 GCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATACC 1975335 Query 132022 TTCTTTATC 132030 ||| || || Sbjct 1975334 TTCCTTGTC 1975326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476592266620080