Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq2 122 8e-23 >seq2 Length=27840087 Score = 122 bits (134), Expect = 8e-23 Identities = 488/751 (65%), Gaps = 18/751 (2%) Strand=Plus/Minus Query 136975 TGCTGATTTACTACTTGATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTG 137034 || || || ||||| ||| ||||||| || | |||| | | ||| | || ||| Sbjct 27784969 TGGTGGTTCACTACCTGAAATTCGCCAGACAAAACTCGTCTTGTGTAAATGTTTGAAGTA 27784910 Query 137035 AACGGCTCGAACGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAA 137094 | ||||||||||| || || || ||||| || || ||||| | ||||| |||||| | Sbjct 27784909 TAAGGCTCGAACGACTCATTATTGCCCAATATTTGCGCAGTGGATGCTGTAGGCATGGGA 27784850 Query 137095 GCGATCAACAATGAATTCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAG 137154 ||||| | || ||||| | | ||||||| || | || || || | ||||| Sbjct 27784849 GCGATGAGTAAAGAATTTCTGACACCGTGTTGCGCTATAGATTTTTTAAGAGCATTCCAA 27784790 Query 137155 TTCCACAGAT-TGTTCGATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACT 137213 | ||| |||| ||| | | | | | ||||||| |||| ||||||||| ||| || Sbjct 27784789 TCCCAAAGATCTGT----TGGTGATTTTTTCCACATATCATACTGCAAAATTCCTTTGCT 27784734 Query 137214 TGCAGGACTTTCTGCATAAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTG 137273 | | ||||| | |||||| ||||||| ||| | | || | |||| || Sbjct 27784733 TACTGGACTGCCAACATAAGTCTCATATGGTCCATCTCTCTGAGCTAATTCACAGCTGGC 27784674 Query 137274 GACTAGTGCGCCATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTG 137333 | | || |||||||| ||||||||| | || | ||| ||| ||||| | Sbjct 27784673 TTCCAAAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAATAAAAATGCTTCACG 27784614 Query 137334 GCTGTCGTAGGGCATATC-CAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATAC 137392 || ||||| || ||| | || || || || || |||| ||||| | || |||| Sbjct 27784613 ACTTTCGTA-GGAATACCGCATTAATATTAATGCGTCCGCAAACCCTTGGACTCCAATAC 27784555 Query 137393 CGATAGGTCTGTGTTTAAAATTTGATATTTGAGC-GCTAACAAGCGGATAAAAGTTTGCG 137451 | ||||| | ||| ||||||||| ||| ||| || ||| || || | ||| Sbjct 27784554 CAATAGGACGGTGACGTAAATTTGATTTTTTAGCTTCTGGCAA-AGGGTAGTAATTTATA 27784496 Query 137452 TCTATAATTCTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAA 137511 || || ||| |||| | || || ||||||| | | | |||| | ||| || || Sbjct 27784495 TCAATTATTTTATTTAAGTTTTTCGTAACGATTTTAGTTACTTCTTTAAGCTTTTTAAAG 27784436 Query 137512 TCGAAGCTTTTAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCAT 137571 || | ||| ||| || | |||| |||| | || ||||| || || || || Sbjct 27784435 TCATAAGATTTCTCCTG--CGTCA-CAAACATATTAAGTGCGATAGACGCCAAATTACAC 27784379 Query 137572 ACGGCCGTTTC-TGTATTGTCGCTGTATTGTACAATTTCGGCGCAAAGATTGCTGTTTCG 137630 || || |||| | | || || |||| || ||||| | ||| ||||| ||| | Sbjct 27784378 ACAGCTATTTCATCTGGTGCCG-AATATTCAACTATTTCTGTGCACAGATTACTGCATTT 27784320 Query 137631 GATCACTCCCAAATTCTTTTGATTG-TTTTTCTCGTTGACGTGA-TCTTTATATATCATA 137688 || ||| | ||| | ||| ||| ||||||| ||| || || || ||| ||| ||| Sbjct 27784319 TATAGTTCCAACATTTTGTTGGTTGCTTTTTCT-GTT-ACAAGAGTCCTTAAATAACATG 27784262 Query 137689 TACGGAGTTCCGGTTTCGACTTGAGTCTCAA 137719 || ||||| || || || ||||||| |||| Sbjct 27784261 TAAGGAGTACCAGTCTCTACTTGAGATTCAA 27784231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445076718624960