Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq2 134 2e-26 >seq2 Length=27840087 Score = 134 bits (148), Expect = 2e-26 Identities = 390/594 (66%), Gaps = 10/594 (2%) Strand=Plus/Plus Query 146919 CAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCC 146978 |||||| | ||| || ||| |||||||| || || ||||| || || ||||| || || Sbjct 14040414 CAGGGGATTCACATGATTGTTATAGACGTGAGCATCGCCCAGTGTATGGACAAAATCGCC 14040473 Query 146979 CGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTT 147038 || || | ||| ||||| ||||| | ||||||||| | || | || ||| ||||| Sbjct 14040474 GGGTTTTAAGCCCGTCACATGGGCGATCATGTAGGTCAACAAGGCATACGAGGCGATGTT 14040533 Query 147039 GAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCC 147098 ||| || || ||||| |||||||| | | ||| ||||| ||||| || | || || Sbjct 14040534 GAAAGGCACTCCCAGACCCATGTCGGCGCTGCGCTGATACAGTTGGCAGGACAATTCACC 14040593 Query 147099 ----GTCGGCCA--CGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGG 147152 | | || | | || ||||| |||| |||||||||||||| |||||| ||| Sbjct 14040594 ACGCGACTGCGATACATAGAACTGCGCCAGGCAGTGGCACGGCGGCAACGCCATTTGGGG 14040653 Query 147153 CAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAAT 147212 | |||| || |||||||| || | | | || | | | || || | || Sbjct 14040654 TATGTCCAAAGGATTCCAGGCGGACATTATGATGCGACGATCCGCCGGATTGTTGCGTAT 14040713 Query 147213 CTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTC-CCGCAGT 147271 ||||| ||| ||||||| || | |||||||| |||| | ||| ||| | Sbjct 14040714 AGTATCGATGACCTGTTTCAGCTGATCAATACCCTGGCCGGTGTAG-TCGTCGGTGCATT 14040772 Query 147272 CCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGG 147331 | || | || |||||||| | |||||||||||| || || || ||||| || || Sbjct 14040773 TACCATATTTTGCGCCAAAGTGACGCCACTGGAAGCCATATACCGGACCCAGATCACCCA 14040832 Query 147332 GCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGA 147391 || | | || | ||| | |||||||||| ||| | | | ||||| | Sbjct 14040833 CCTCGCGATCCGTGTGGCCACATTTGTCGAGAAACTCGCGGGTGCTATTACCATCCCATA 14040892 Query 147392 TGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCG-GATGAACCAGAGC 147450 || || ||| | || ||| | || || |||| | |||||||||| | Sbjct 14040893 TGTGTACATTCTTCTCCTGCAGGATCTTTGCATCTGT-CTGCCCAGCAATGAACCAGATC 14040951 Query 147451 AGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAAC 147504 |||||||| || |||| | ||||| | |||||||||||||| ||||||| Sbjct 14040952 AGCTCCTCGGCCACGCCCCGAAAGAAGACGCGCTTGGTGGTCAGCAAGGGGAAC 14041005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583464820939200