Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4 122 1e-21 >seq4 Length=23952536 Score = 122 bits (134), Expect = 1e-21 Identities = 321/482 (67%), Gaps = 6/482 (1%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 |||| |||||||| || ||||| | || ||||| || ||| ||| | | ||| Sbjct 3358987 AGGCTGAGGCCTCATTCTGGACTGTGGAAGAGGTGGATCTCTCTAAAGACTTGACCGACT 3358928 Query 1455856 GGGTGTCGCTGAGC-GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914 ||| || | | | || ||||||| || || ||| || || |||||||| ||| || Sbjct 3358927 GGGCA-CGTTTAACTGATAACGAGCGTCACTTTATCTCCCATGTGCTCGCCTTCTTT-GC 3358870 Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974 |||| ||||||||| || ||||| || | || ||||| | | ||||| ||| | Sbjct 3358869 CGCCTCCGATGGCATTGTTAATGAGAATCTTGTCGAGCGCTTCAGCCAGGAGGTGCAAAT 3358810 Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034 | || || |||| || || || || || |||||||| || || | ||||| || | Sbjct 3358809 AACCGAAGCTCGTTGTTTCTATGGCTTTCAAATCGCCATGGAGAATGTGCACTCGGAGAT 3358750 Query 1456035 CTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCG 1456094 ||| | |||||||| || || | | ||| || || ||| | || || Sbjct 3358749 GTACAGCGTGCTGATCGATACATATATTAGGGATCCACAGGAACGGGATTATCTGTTCAA 3358690 Query 1456095 CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAA 1456154 ||||| || || |||| | || | | ||||||||| |||||| | ||||| Sbjct 3358689 TGCCATTGAAACAATGCCCGCTGTCAAGCGAAAGGCCGATTGGGCGCTCTCTTGGATTT- 3358631 Query 1456155 CAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATC 1456213 || || ||| ||| |||||| |||| | || | | || || || || ||||| ||| Sbjct 3358630 CATCGAAGGCGGCGA-ACTTTGGCGAGAGAATCATTGCGTTCGCTGCCGTGGAGGGAATC 3358572 Query 1456214 TTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 || || ||||| || | | ||||||||||| ||||| || || || ||||||||| Sbjct 3358571 TTCTTTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAACGTGGTCTGATGCCCGGT 3358512 Query 1456274 CT 1456275 || Sbjct 3358511 CT 3358510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177504676058836