Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq6 125 6e-24 seq4 114 1e-20 seq2 95.1 1e-14 seq3 93.3 4e-14 >seq6 Length=26536676 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 35503 TTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTA 35562 || ||| |||||||||| | | |||||| || || ||| |||||| || |||||||| Sbjct 9461987 TTAATTGCCACCACGTAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTA 9462046 Query 35563 ATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 |||| || || || | || ||||||||||| || || || |||| |||||||| || Sbjct 9462047 GTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATC 9462106 Query 35623 CGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGA 35682 | |||| | ||||||||| |||||| ||| | | | | | ||||| | Sbjct 9462107 TGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGG 9462166 Query 35683 TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||||| ||||| ||||| || |||||||| || || || |||||||| Sbjct 9462167 CTCGACCTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 9462220 Score = 100 bits (110), Expect = 3e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||| || |||| || || || | || ||||||||||| || || || Sbjct 9462257 CTCCTTCTGGATGTTRTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAA 9462316 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||||| || | |||| | ||||||||| |||||| ||| | | | Sbjct 9462317 GATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACATT 9462376 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| | || ||||||| ||||| || || || |||||||| || || Sbjct 9462377 TTCAATGGTGTCCGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGAC 9462436 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 9462437 GAAGATCTGCAT 9462448 >seq4 Length=23952536 Score = 114 bits (126), Expect = 1e-20 Identities = 203/296 (69%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 44131 TGTGGAACGCTGCCCAAACACAACTGTTGCGAGAAGGTAAAATGCACCAATACATGCGTA 44190 |||||||| | ||||| || ||| | ||||| ||||||||| | |||| | Sbjct 633119 TGTGGAACTCGGCCCAGCTGCAGCTGGTCAAGGAAGGCAAAATGCACGGGTTTCTGCGCA 633178 Query 44191 TGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGCGCAAACCGCGCTCGTTCATG 44250 |||||||| ||| ||||| || |||||| | ||| || || ||||| | || Sbjct 633179 TGTATTGGGCCAAAAAGATTTTAGAGTGGACCGAAACGCCGGAACAGGCGCTTGAGTATA 633238 Query 44251 CCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAACGGGTACGTAGGAT 44310 ||| | ||||||||||||||||| |||| || || || || || || ||||| || | Sbjct 633239 GCATATTATTGAACGACAAGTACAGTCTGGATGGACGTGATCCGAATGGCTACGTTGGTT 633298 Query 44311 GTATGTGGTCCATTTGCGGTGTCCACGACAGGGCGTGGCGAGAGCTACCCATCTACGGCA 44370 | ||||||||||| | || | |||||| | ||| |||| | || | || | Sbjct 633299 GCATGTGGTCCATCGGTGGGATTCACGACCAAGGTTGGAAGGAGCGCGCGATATTTGGTA 633358 Query 44371 AAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGTAAAAACCTAT 44426 | | ||||| |||||||| | || ||| ||||||||||||| || ||||| Sbjct 633359 AGATTCGCTATATGAACTATCAAGGCTGCAAGCGAAAGTTTGATGTCAATGCCTAT 633414 >seq2 Length=27840087 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || || || |||||| ||||||||||| |||| | Sbjct 185597 CCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 185538 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || || || |||| |||||||| || | || Sbjct 185537 AGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGG 185478 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| ||||| |||||| ||| | | | | | ||||| | || ||| Sbjct 185477 ATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 185418 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 |||| || || || || || || | |||||| || || || |||||| ||| Sbjct 185417 TCCAAAGTAATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCATTTTGT 185366 >seq3 Length=22052390 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| || | |||||| || | || ||||| ||||| || || || Sbjct 1975136 CTCCTTCTGGATATTGTAGTCAGACAAGGTGCGGCCATCTTCCAGTTGCTTGCCGGCGAA 1975077 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||||| || | |||| | |||||| || ||||| ||| | | Sbjct 1975076 GATCAGACGCTGCTGATCTGGTGGAATTCCCTCCTTATCTTGAATCTTGGCCTTGACGTT 1975017 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||| | || ||||||| ||||| || || |||||||||||||| || Sbjct 1975016 CTCAATGGTATCGGAAGGCTCAACCTCCAAGGTGATGGTCTTTCCCGTCAAAGTTTTAAC 1974957 Query 35725 AAATATCTGCATTCTG 35740 || ||||||||| || Sbjct 1974956 GAAGATCTGCATTTTG 1974941 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | || |||||||| | ||| ||||||||||||||||||||||| | Sbjct 1975459 CCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGAC 1975400 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || ||||| ||||| || || || |||| |||||||| || | ||| Sbjct 1975399 AGGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1975340 Query 35630 ACGCTCTCCTTGTCCATGATCTT 35652 | | ||||||||| ||||| Sbjct 1975339 ATACCTTCCTTGTCCTGAATCTT 1975317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450775692224240