Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq6 125 6e-24
seq4 114 1e-20
seq2 95.1 1e-14
seq3 93.3 4e-14
>seq6
Length=26536676
Score = 125 bits (138), Expect = 6e-24
Identities = 168/234 (72%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 35503 TTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTA 35562
|| ||| |||||||||| | | |||||| || || ||| |||||| || ||||||||
Sbjct 9461987 TTAATTGCCACCACGTAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTA 9462046
Query 35563 ATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622
|||| || || || | || ||||||||||| || || || |||| |||||||| ||
Sbjct 9462047 GTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATC 9462106
Query 35623 CGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGA 35682
| |||| | ||||||||| |||||| ||| | | | | | ||||| |
Sbjct 9462107 TGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGG 9462166
Query 35683 TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| ||||||| ||||| ||||| || |||||||| || || || ||||||||
Sbjct 9462167 CTCGACCTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 9462220
Score = 100 bits (110), Expect = 3e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || ||||| || |||| || || || | || ||||||||||| || || ||
Sbjct 9462257 CTCCTTCTGGATGTTRTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAA 9462316
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| |||||||| || | |||| | ||||||||| |||||| ||| | | |
Sbjct 9462317 GATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACATT 9462376
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | | ||||| | || ||||||| ||||| || || || |||||||| || ||
Sbjct 9462377 TTCAATGGTGTCCGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGAC 9462436
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 9462437 GAAGATCTGCAT 9462448
>seq4
Length=23952536
Score = 114 bits (126), Expect = 1e-20
Identities = 203/296 (69%), Gaps = 0/296 (0%)
Strand=Plus/Plus
Query 44131 TGTGGAACGCTGCCCAAACACAACTGTTGCGAGAAGGTAAAATGCACCAATACATGCGTA 44190
|||||||| | ||||| || ||| | ||||| ||||||||| | |||| |
Sbjct 633119 TGTGGAACTCGGCCCAGCTGCAGCTGGTCAAGGAAGGCAAAATGCACGGGTTTCTGCGCA 633178
Query 44191 TGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGCGCAAACCGCGCTCGTTCATG 44250
|||||||| ||| ||||| || |||||| | ||| || || ||||| | ||
Sbjct 633179 TGTATTGGGCCAAAAAGATTTTAGAGTGGACCGAAACGCCGGAACAGGCGCTTGAGTATA 633238
Query 44251 CCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAACGGGTACGTAGGAT 44310
||| | ||||||||||||||||| |||| || || || || || || ||||| || |
Sbjct 633239 GCATATTATTGAACGACAAGTACAGTCTGGATGGACGTGATCCGAATGGCTACGTTGGTT 633298
Query 44311 GTATGTGGTCCATTTGCGGTGTCCACGACAGGGCGTGGCGAGAGCTACCCATCTACGGCA 44370
| ||||||||||| | || | |||||| | ||| |||| | || | || |
Sbjct 633299 GCATGTGGTCCATCGGTGGGATTCACGACCAAGGTTGGAAGGAGCGCGCGATATTTGGTA 633358
Query 44371 AAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGTAAAAACCTAT 44426
| | ||||| |||||||| | || ||| ||||||||||||| || |||||
Sbjct 633359 AGATTCGCTATATGAACTATCAAGGCTGCAAGCGAAAGTTTGATGTCAATGCCTAT 633414
>seq2
Length=27840087
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| || || || |||||| ||||||||||| |||| |
Sbjct 185597 CCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 185538
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || ||||||||||| || || || |||| |||||||| || | ||
Sbjct 185537 AGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGG 185478
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | ||| ||||| |||||| ||| | | | | | ||||| | || |||
Sbjct 185477 ATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 185418
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741
|||| || || || || || || | |||||| || || || |||||| |||
Sbjct 185417 TCCAAAGTAATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCATTTTGT 185366
>seq3
Length=22052390
Score = 93.3 bits (102), Expect = 4e-14
Identities = 138/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || || ||||| || | |||||| || | || ||||| ||||| || || ||
Sbjct 1975136 CTCCTTCTGGATATTGTAGTCAGACAAGGTGCGGCCATCTTCCAGTTGCTTGCCGGCGAA 1975077
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| |||||||| || | |||| | |||||| || ||||| ||| | |
Sbjct 1975076 GATCAGACGCTGCTGATCTGGTGGAATTCCCTCCTTATCTTGAATCTTGGCCTTGACGTT 1975017
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | || ||| | || ||||||| ||||| || || |||||||||||||| ||
Sbjct 1975016 CTCAATGGTATCGGAAGGCTCAACCTCCAAGGTGATGGTCTTTCCCGTCAAAGTTTTAAC 1974957
Query 35725 AAATATCTGCATTCTG 35740
|| ||||||||| ||
Sbjct 1974956 GAAGATCTGCATTTTG 1974941
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|| ||||| | | || |||||||| | ||| ||||||||||||||||||||||| |
Sbjct 1975459 CCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGAC 1975400
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || | || ||||| ||||| || || || |||| |||||||| || | |||
Sbjct 1975399 AGGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1975340
Query 35630 ACGCTCTCCTTGTCCATGATCTT 35652
| | ||||||||| |||||
Sbjct 1975339 ATACCTTCCTTGTCCTGAATCTT 1975317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450775692224240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |