Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2 136 4e-27 seq3 109 6e-19 seq6 91.5 1e-13 >seq2 Length=27840087 Score = 136 bits (150), Expect = 4e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| | ||||| ||||| ||||||||||||||| | ||| | Sbjct 185588 AGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGT 185529 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||||||| || || || || ||| Sbjct 185528 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCT 185469 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || ||||| || | ||||| || | || || || | |||| Sbjct 185468 TTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAAGTA 185409 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGT 134718 ||||| || ||||| | |||||||||||| ||||||||||||| Sbjct 185408 ATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCATTTTGT 185366 Score = 122 bits (134), Expect = 9e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| | || || || ||||| |||||||||||| || ||| || Sbjct 14207455 AGGCGGAGCACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGA 14207514 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | || ||||| ||||| || | |||||||||||| || || || |||||| Sbjct 14207515 CCATCTTCCAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCT 14207574 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || |||||| || | || || |||| ||| || || ||||| Sbjct 14207575 TTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTG 14207634 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| ||||| |||| |||||||| || || |||||| || Sbjct 14207635 ATGGTCTTACCCGTTAGGGTTTTAACAAAGATCTGCATTGTG 14207676 Score = 96.9 bits (106), Expect = 4e-15 Identities = 698/1102 (63%), Gaps = 37/1102 (3%) Strand=Plus/Plus Query 8233 GCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGC 8292 ||||| || |||| |||| || || |||| || |||||| | | || ||| |||| Sbjct 27784224 GCCATCATTGAATCTCAAGTAGAGACTGGTACTCCTTACATGTTATTTAAGGACTCTTGT 27784283 Query 8293 AACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAA 8352 ||| |||||||| ||| || || || || || ||||| ||||||||| | ||| Sbjct 27784284 AACAGAAAAAGCAACCAACAAAATGTTGGAACTATAAAATGCAGTAATCTGTGCACAGAA 27784343 Query 8353 ATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTA 8412 || || | || || || || ||| | || || || ||| | ||||| | | Sbjct 27784344 ATAGTTGAATATTCGGCACCAGATGAAATAGCTGTGTGTAATTTGGCGTCTATCGCACTT 27784403 Query 8413 AACGCGTTCGTTGATCGACGCTCAAACACTTACGACTTTGAACAATTGAAAAACGCCGTG 8472 || ||| || || || | ||| |||| |||||| || | | ||| | | Sbjct 27784404 AATATGTTTGT-GA-CGCAGGAGAAAT-CTTATGACTTTAAAAAGCTTAAAGAAGTAACT 27784460 Query 8473 CAAGTGACGGTACGCAAT--TTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAG 8530 || | || |||| || ||| || || |||||| | |||| || || ||| || Sbjct 27784461 AAAAT--CGTTACGAAAAACTTAAATAAAATAATTGATATAAATTACTACCCTTTGCCAG 27784518 Query 8531 AAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCG 8590 |||| ||| || | || ||| | || |||| | || || ||||| | || | Sbjct 27784519 AAGCTAAAAAATCAAATTTACGTCACCGTCCTATTGGTATTGGAGTCCAAGGGTTTGCGG 27784578 Query 8591 ACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAA-CATA 8649 |||| || | |||| |||||||||| | ||||| | | || || Sbjct 27784579 ACGCATTAATATTAATGCGGTATTCCTACGAAAGTCGTGAAGCATTTTTATTAAATCAGC 27784638 Query 8650 AAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCC-GAGA 8708 | | | || |||| | || || || || || |||||||||||| || | || | |||| Sbjct 27784639 AGATTTTCG-AAACTATATACTATGGAGCTTTGGAAGCCAGCTGTGAATTAGCTCAGAGA 27784697 Query 8709 ATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGA 8768 ||| | | || || | || | ||||| || | ||| ||||| ||||| || || Sbjct 27784698 GATGGAC-CATATGAGACTTATGTTGGCAGTCCAGTAAGCAAAGGAATTTTGCAGTATGA 27784756 Query 8769 CATGTGGAATG--TCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAA--- 8823 |||||||| |||| || |||||| | |||||| | | | ||| ||| Sbjct 27784757 TATGTGGAAAAAATCACCAACAGATCTTTGGG--ATTGGAATGCTCTTAAA---AAATCT 27784811 Query 8824 ATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACT 8883 || || ||| |||| | | ||||| | | | ||| |||||| || || | ||| Sbjct 27784812 ATAGCGCAACACGGTGTCAGAAATTCTTTACTCATCGCTCCCATGCCTACAGCATCCACT 27784871 Query 8884 GCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGA 8943 || |||||| |||| || || || || || ||||| | || ||| | ||| ||| Sbjct 27784872 GCGCAAATATTGGGCAATAATGAGTCGTTCGAGCCTTATACTTCAAACATTTACACAAGA 27784931 Query 8944 CGAGTGTTGGCCGGCGATTTTTTAATGCTGAATCGTCATTTGATGCGCGACTTGATCGAA 9003 ||||| ||| | ||||| ||| | |||| | || || | || || || | ||| Sbjct 27784932 CGAGTTTTGTCTGGCGAATTTCAGGTAGTGAACCACCACTTACTACGTGATTTAACTGAA 27784991 Query 9004 GCGGGCGTTTACGACGACAAAATGCGCGATGCCATCGTGG-AAGCCAACGGCAGCGTTCA 9062 | | | || ||| | ||| || || | ||| | || | || Sbjct 27784992 CTTGATTTGTGGGATGACGAGATGAAAAATCAAATAATATCAAGTCGT-GGTTCAATACA 27785050 Query 9063 GAACATTGACGCGGTGCCTCAACACATTAAAGAGCTGTATAAAACCGTTTGGGAAATGA- 9121 || ||||| | | ||| || | ||| || |||||||||| || |||||||| Sbjct 27785051 AAATATTGAATCTATTCCTAAAGAAATTCGTGATTTGTATAAAACTGTGTGGGAAATTTC 27785110 Query 9122 AG-CAAAGCACGCTGATCGGCATGGCTGCGGATAGAGGCGCTTTTATTGATCAGAGTCAA 9180 || |||| || || || ||||| || |||||||| || ||||||||||| ||||| Sbjct 27785111 AGTCAAATCAA-CT-ATAAAAATGGCGGCTGATAGAGGAGCGTTTATTGATCAAAGTCAG 27785168 Query 9181 TCTTTTAACGTGTTC--GTAGCCGCACCAACTTACG---CTTTGATGTCCAGCATTCATT 9235 ||||| || | ||| ||||| | ||| | ||| | || | ||| || |||| Sbjct 27785169 TCTTTCAA--TATTCATGTAGCTGAACCCAATTATGGAAAATTAACGTC---AATCCATT 27785223 Query 9236 ATTTAACTTGGAAAATGGGTTTAAAAACAGGCATGTACTATTTGCGCACAAAACCCGCCG 9295 || | |||||| |||| | || || |||||||| ||| | ||||||||||| || | Sbjct 27785224 TTTATTCATGGAAAGCGGGTCTTAAGACCGGCATGTATTATCTTCGCACAAAACCAGCGG 27785283 Query 9296 CTGAACCTATCAAATTTACAGT 9317 || | |||| |||| || || Sbjct 27785284 CTAATGCTATACAATTCACTGT 27785305 >seq3 Length=22052390 Score = 109 bits (120), Expect = 6e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTC 134563 || || || || || || ||||| || || |||||||| | ||| |||| | || || Sbjct 1975153 ACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAA-GGTGCGGCCATCTTC 1975095 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 || || ||||| || || |||| |||||||||||| || || || || || || ||||| Sbjct 1975094 CAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATTCCCTCCTTATCTTG 1975035 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 ||| || ||||| || | || ||||| | || || || | || ||||| || Sbjct 1975034 AATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAGGTGATGGTCTT 1974975 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || |||||||||||||| || ||||||||| Sbjct 1974974 TCCCGTCAAAGTTTTAACGAAGATCTGCATTTTG 1974941 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || || ||||||||||||||||| ||| | |||| || || || || || Sbjct 1975435 TGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAGGGTGCGACCATCTTCCAGTTGC 1975376 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || |||| |||||||||||| || || || ||||| || || ||||| || Sbjct 1975375 TTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAATCTT 1975317 >seq6 Length=26536676 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| | || || ||||| || |||||||||||| | ||| | Sbjct 9462003 AGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 9462062 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||||||| || || || || || Sbjct 9462063 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCC 9462122 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || || || || | ||||| || | || || || | || Sbjct 9462123 TTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTG 9462182 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || ||||| || ||||| || ||||| Sbjct 9462183 ATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 9462220 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || || || ||||| || ||||| |||||| | ||| | || || Sbjct 9462240 ACCAGATGAAGGGTCGACTCCTTCTGGATGTTRTAGTCGGACAGAGTGCGTCCATCCTCC 9462299 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || |||| |||||||||||| || || || || || || ||||| Sbjct 9462300 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGG 9462359 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || || | ||||| || | || || || | ||| ||||| || Sbjct 9462360 ATCTTGGCCTTAACATTTTCAATGGTGTCCGAGGGCTCAACCTCCAAAGTGATGGTCTTG 9462419 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || ||||| || ||||| || ||||| || Sbjct 9462420 CCAGTCAAAGTCTTGACGAAGATCTGCATATT 9462451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505378323048560