Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq2 632 3e-176
seq4 208 1e-48
>seq2
Length=27840087
Score = 632 bits (700), Expect = 3e-176
Identities = 1263/1851 (68%), Gaps = 28/1851 (2%)
Strand=Plus/Minus
Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454
|| |||||||| || ||||| ||||| ||||| || ||||| ||||| || |||
Sbjct 27785281 GCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGACCCGCTTTCCATGAATAAAAA 27785222
Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514
|| || |||| ||| |||| | || || |||| ||||||||| | || ||||||
Sbjct 27785221 TGGATTGACGTTAATTTTCCATAATTGGGTTCAGCTACATGAATATTGAAAGACTGACTT 27785162
Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGA--GGAATTT 68572
||||| || || ||||||||||| ||||||||||||||| | | ||||| | |||||
Sbjct 27785161 TGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTATAGT--TGATTTGACTGAAATTT 27785104
Query 68573 CCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA--GGCTCG-TATTTTGAATGG 68629
|||| | ||| ||| | | | || || | |||| | || ||||||| || |
Sbjct 27785103 CCCACACAGTTTTATACAAATCACGAATTTCTTTAGGAATAGATTCAATATTTTGTATTG 27785044
Query 68630 ATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTA 68689
| |||| | ||||| ||| ||| || ||||| |||| |||||| | || ||||
Sbjct 27785043 AACCACGACTTGATATTATTTGATTTTTCATCTCGTCATCCCACAAATCAAGTTCAGTTA 27784984
Query 68690 AAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGT 68749
|| | | || | || | || |||| |||||||| ||||| || |||| | ||||
Sbjct 27784983 AATCACGTAGTAAGTGGTGGTTCACTACCTGAAATTCGCCAGACAAAACTCGTCTTGTGT 27784924
Query 68750 AAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATG 68809
|||| || ||||| || || | || |||||||| |||| ||||| ||||| ||||
Sbjct 27784923 AAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCCCAATATTTGCGCAGTGGATG 27784864
Query 68810 CAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGT---GTTAT-GATTTTA 68865
| || ||||| || || | | |||| |||||| | ||| ||| | ||| ||||||
Sbjct 27784863 CTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACCGTGTTGCGCTATAGATTTT- 27784805
Query 68866 TCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGT 68925
|| ||| ||||||||||||||||| | |||| ||||| | ||| || ||
Sbjct 27784804 ---TTAAGAGCATTCCAATCCCAAAGATCTGTTGGTGATTTTTTCCACATATCATACTGC 27784748
Query 68926 AGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCT 68985
| |||||| || ||| | ||| ||| || ||||| ||||| || | ||||
Sbjct 27784747 AAAATTCCTTTGCTTACTGGACTGCCAACATAAGTCTCATATGGTCCATCTCTCTGAGCT 27784688
Query 68986 AGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGA 69045
| |||||| || || || || || || || || || ||||||||||||| || ||| |
Sbjct 27784687 AATTCACAGCTGGCTTCCAAAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAAT 27784628
Query 69046 TCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCC 69105
|||||| |||| ||| | | ||| | | | || ||||| || || || ||
Sbjct 27784627 AAAAATGCTTCACGACTTTCGTAGGAATACCGCATTAATATTAATGCGTCCGCAAACCCT 27784568
Query 69106 TGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGA 69165
|| || |||||||| ||||| | || | |||||| ||| ||||||||| | |||
Sbjct 27784567 TGGACTCCAATACCAATAGGACGGTGACGTAAATTTGATTTTTTAGCTTCTGGCAAAGGG 27784508
Query 69166 TAATAATTAATATCTATAATTTTA-TTAAG-ATTTCGGACTACTACTTTAACCACGTCCT 69223
|| ||||| ||||| || |||||| ||||| ||||| | || | |||| || || |
Sbjct 27784507 TAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGTA--ACGATTTTAGTTACTTCTT 27784450
Query 69224 TTAGTTTGAGAAAATCA-AATCGTCCATCT--ATAACAAACATATTCAGTGCTACAGATG 69280
| || || ||| ||| || | | || | ||||||||||| ||||| | ||| |
Sbjct 27784449 TAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCACAAACATATTAAGTGCGATAGACG 27784390
Query 69281 CTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGAT 69340
| | |||||| || |||| |||| | | ||||| | ||| ||||| || ||||
Sbjct 27784389 CCAAATTACACACAGCTATTTCATCTGGTGCCGAATATTCAACTATTTCTGTGCACAGAT 27784330
Query 69341 TACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGT 69400
|||| ||||| ||||| || | |||||| || || || ||| ||||||| | ||||||
Sbjct 27784329 TACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAGTCCTTAA 27784270
Query 69401 AAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCC 69460
| | || | ||||||||||| || | |||||||| || || | ||||| ||
Sbjct 27784269 ATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTCAATGATGGCAAACCAAA-GAGAT 27784211
Query 69461 T-AGCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCG 69519
| ||| || || || || || |||| |||||||| |||| || |||
Sbjct 27784210 TGAGCCTTAATAACTCGATTCGCTCGTCCCTCTCGTTCATATTTGATATAGAGGTTTTCA 27784151
Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579
|| || || ||||||||||| | ||||| |||| || ||||||||| ||||||||
Sbjct 27784150 AAATCTTCACCCCAAACATCTGGGAGGCCAGGGCATTTATGTGGACACATTAATGACCAG 27784091
Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639
| |||| | | | ||| ||||||||||| ||||| || ||||| | || | ||| |||
Sbjct 27784090 TCTTCATTAGCTTCAACACGTTTCATAAAAAGATCAGGTATCCACAATGCAAAAAAAAGA 27784031
Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATA 69699
|| | | | || || || ||||| |||||||||||||| || | ||| || | | |
Sbjct 27784030 TCGCGTGCACGATGCTCCTCCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGAAGACA 27783971
Query 69700 TCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGA 69759
|| || ||||| || || | |||||| || | |||| |||| |||| || ||||||
Sbjct 27783970 TCTGAGTGCCAAGGCTCCAAATATATAGCAAATGCTCCAGGTCTTTTACCACCGCCCTGA 27783911
Query 69760 TCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGG-AATAATACCATTAGATTT 69818
|| | || | || |||||| | ||||| | ||| || | |||| ||||| || |
Sbjct 27783910 TCAACATAACGCGCGACATTATTAAATACTCTTAACATTGGTACTAAT-CCATTTGAAGT 27783852
Query 69819 ACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTAT 69878
|| || |||||| |||| | | ||| | || |||||| || | || || ||
Sbjct 27783851 GCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAATACAGTGAACATTAAGTCCAAT 27783792
Query 69879 TCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTAT 69938
|| |||||| || || || | || || ||| | || | | | || || || ||
Sbjct 27783791 GCCACCTGCCGACTTTGATATCATTGCGCATTGTTCAACTGATTTAAAAATCCCTTCAAT 27783732
Query 69939 GCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCG 69997
|||| | || ||||| ||||||||| ||||| ||| || | | || | |
Sbjct 27783731 TGAATCAGACACTATAGTTAA-AAGAAAACATGAAGACAATTGTGGACGATTTGTGGCTG 27783673
Query 69998 CATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTT 70057
|| ||| | || || ||||| ||||| || | ||||| |||| |||||| ||||
Sbjct 27783672 CAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGATAGCAAATTGTAGGTTT 27783613
Query 70058 CAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCT 70117
||| || || || ||||| ||| || ||||| ||||||||||| | || |||||
Sbjct 27783612 CAACTGCAGAATCAATATCTTCGCCATGTATACCTATGGCGACACGCATTAGCAAATGCT 27783553
Query 70118 GAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAA 70177
| |||| |||| | |||| ||||||||| | || || || || || || || |
Sbjct 27783552 GTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAATACGACCGCTCAAGTGTCTTGA 27783493
Query 70178 ACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTA 70228
| ||||| ||||| ||| || || | || || |||||| |||| ||||
Sbjct 27783492 ATCCAAAGTAGTTATATCCGAAATCGCGATCATATATAATAGCAGAGTTTA 27783442
Score = 98.7 bits (108), Expect = 1e-15
Identities = 123/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 70338 AAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGC 70397
||||| |||||| ||||| || || | ||| || | || ||||| || || |||| |||
Sbjct 27782619 AAATACTTTTTTAGTTTCTTTATGAAGATTGGAAACTGCGATTCTTGCCGCCAGAAGAGC 27782560
Query 70398 ATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTC 70457
|||||| | ||| || || || || | ||||| |||||||| || || |||| |||||
Sbjct 27782559 ATAGTCCGCATGATGGGTTGTTAAACTGGCTGCAATTTCCGCGGCCAAGTTATCCAATTC 27782500
Query 70458 TATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATT 70506
| || | || ||| || || || | ||||||||||| || ||||
Sbjct 27782499 TTGTGTAGACACACCGCAGTAGAGTCCATTAATAACTTTCAGGGTTATT 27782451
>seq4
Length=23952536
Score = 208 bits (230), Expect = 1e-48
Identities = 492/739 (67%), Gaps = 7/739 (1%)
Strand=Plus/Plus
Query 39317 ACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 39376
|| ||||| ||| ||||| ||||| ||||||||| || ||||| ||||| ||||
Sbjct 3358153 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3358212
Query 39377 GATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAAT 39436
|| || | ||||| || || ||||| | | ||| || |||| || || | |
Sbjct 3358213 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3358272
Query 39437 TCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATT 39496
|| | || | ||| ||||||||||| || || ||||| | ||||||||||
Sbjct 3358273 TCCACCAACAGACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATG 3358332
Query 39497 CCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCT 39556
|| || | ||| || || ||||| || || |||||||||| || ||| || || ||
Sbjct 3358333 CCAATCAATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCA 3358392
Query 39557 GTTAT--TATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTA 39614
| || | || ||| | | |||| || || | |||| ||||| ||||| |
Sbjct 3358393 GAGATGATCTCAATGATGC--GCTCACGGCTAGGACGTTGCACCAAATGCCGGAACATCA 3358450
Query 39615 AGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGA 39674
|| ||||||||||| | |||||| || | || || || || || || || |
Sbjct 3358451 TCACAGCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCA 3358510
Query 39675 GTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGA 39734
| || ||||| |||||||| || || |||||||| || | ||||| ||| |||||
Sbjct 3358511 GACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGA 3358570
Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT--ATG 39792
|||| || || || || || || |||| | |||||| || | | | | || |||
Sbjct 3358571 AGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTCGATG 3358630
Query 39793 -TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851
||||| | |||||||| || || ||| ||| ||||||||||| || ||||
Sbjct 3358631 AAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCAT 3358690
Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911
| || ||||||| ||| | ||| ||| ||||||||| || | || || ||||
Sbjct 3358691 TGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTACA 3358750
Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971
| || || || | || || || || || ||||| || || ||||| | ||||| || |
Sbjct 3358751 TCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGGTTA 3358810
Query 39972 TTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGG 40031
|||| ||||| | || | || | | ||| ||||| || || ||||| ||||
Sbjct 3358811 TTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAGGCGG 3358870
Query 40032 CAAAAAATGCCAATACATG 40050
|||| || || | |||||
Sbjct 3358871 CAAAGAAGGCGAGCACATG 3358889
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686881512547920
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