Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2 632 3e-176 seq4 208 1e-48 >seq2 Length=27840087 Score = 632 bits (700), Expect = 3e-176 Identities = 1263/1851 (68%), Gaps = 28/1851 (2%) Strand=Plus/Minus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || |||||||| || ||||| ||||| ||||| || ||||| ||||| || ||| Sbjct 27785281 GCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGACCCGCTTTCCATGAATAAAAA 27785222 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || || |||| ||| |||| | || || |||| ||||||||| | || |||||| Sbjct 27785221 TGGATTGACGTTAATTTTCCATAATTGGGTTCAGCTACATGAATATTGAAAGACTGACTT 27785162 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGA--GGAATTT 68572 ||||| || || ||||||||||| ||||||||||||||| | | ||||| | ||||| Sbjct 27785161 TGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTATAGT--TGATTTGACTGAAATTT 27785104 Query 68573 CCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA--GGCTCG-TATTTTGAATGG 68629 |||| | ||| ||| | | | || || | |||| | || ||||||| || | Sbjct 27785103 CCCACACAGTTTTATACAAATCACGAATTTCTTTAGGAATAGATTCAATATTTTGTATTG 27785044 Query 68630 ATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTA 68689 | |||| | ||||| ||| ||| || ||||| |||| |||||| | || |||| Sbjct 27785043 AACCACGACTTGATATTATTTGATTTTTCATCTCGTCATCCCACAAATCAAGTTCAGTTA 27784984 Query 68690 AAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGT 68749 || | | || | || | || |||| |||||||| ||||| || |||| | |||| Sbjct 27784983 AATCACGTAGTAAGTGGTGGTTCACTACCTGAAATTCGCCAGACAAAACTCGTCTTGTGT 27784924 Query 68750 AAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATG 68809 |||| || ||||| || || | || |||||||| |||| ||||| ||||| |||| Sbjct 27784923 AAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCCCAATATTTGCGCAGTGGATG 27784864 Query 68810 CAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGT---GTTAT-GATTTTA 68865 | || ||||| || || | | |||| |||||| | ||| ||| | ||| |||||| Sbjct 27784863 CTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACCGTGTTGCGCTATAGATTTT- 27784805 Query 68866 TCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGT 68925 || ||| ||||||||||||||||| | |||| ||||| | ||| || || Sbjct 27784804 ---TTAAGAGCATTCCAATCCCAAAGATCTGTTGGTGATTTTTTCCACATATCATACTGC 27784748 Query 68926 AGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCT 68985 | |||||| || ||| | ||| ||| || ||||| ||||| || | |||| Sbjct 27784747 AAAATTCCTTTGCTTACTGGACTGCCAACATAAGTCTCATATGGTCCATCTCTCTGAGCT 27784688 Query 68986 AGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGA 69045 | |||||| || || || || || || || || || ||||||||||||| || ||| | Sbjct 27784687 AATTCACAGCTGGCTTCCAAAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAAT 27784628 Query 69046 TCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCC 69105 |||||| |||| ||| | | ||| | | | || ||||| || || || || Sbjct 27784627 AAAAATGCTTCACGACTTTCGTAGGAATACCGCATTAATATTAATGCGTCCGCAAACCCT 27784568 Query 69106 TGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGA 69165 || || |||||||| ||||| | || | |||||| ||| ||||||||| | ||| Sbjct 27784567 TGGACTCCAATACCAATAGGACGGTGACGTAAATTTGATTTTTTAGCTTCTGGCAAAGGG 27784508 Query 69166 TAATAATTAATATCTATAATTTTA-TTAAG-ATTTCGGACTACTACTTTAACCACGTCCT 69223 || ||||| ||||| || |||||| ||||| ||||| | || | |||| || || | Sbjct 27784507 TAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGTA--ACGATTTTAGTTACTTCTT 27784450 Query 69224 TTAGTTTGAGAAAATCA-AATCGTCCATCT--ATAACAAACATATTCAGTGCTACAGATG 69280 | || || ||| ||| || | | || | ||||||||||| ||||| | ||| | Sbjct 27784449 TAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCACAAACATATTAAGTGCGATAGACG 27784390 Query 69281 CTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGAT 69340 | | |||||| || |||| |||| | | ||||| | ||| ||||| || |||| Sbjct 27784389 CCAAATTACACACAGCTATTTCATCTGGTGCCGAATATTCAACTATTTCTGTGCACAGAT 27784330 Query 69341 TACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGT 69400 |||| ||||| ||||| || | |||||| || || || ||| ||||||| | |||||| Sbjct 27784329 TACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAGTCCTTAA 27784270 Query 69401 AAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCC 69460 | | || | ||||||||||| || | |||||||| || || | ||||| || Sbjct 27784269 ATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTCAATGATGGCAAACCAAA-GAGAT 27784211 Query 69461 T-AGCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCG 69519 | ||| || || || || || |||| |||||||| |||| || ||| Sbjct 27784210 TGAGCCTTAATAACTCGATTCGCTCGTCCCTCTCGTTCATATTTGATATAGAGGTTTTCA 27784151 Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 || || || ||||||||||| | ||||| |||| || ||||||||| |||||||| Sbjct 27784150 AAATCTTCACCCCAAACATCTGGGAGGCCAGGGCATTTATGTGGACACATTAATGACCAG 27784091 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639 | |||| | | | ||| ||||||||||| ||||| || ||||| | || | ||| ||| Sbjct 27784090 TCTTCATTAGCTTCAACACGTTTCATAAAAAGATCAGGTATCCACAATGCAAAAAAAAGA 27784031 Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATA 69699 || | | | || || || ||||| |||||||||||||| || | ||| || | | | Sbjct 27784030 TCGCGTGCACGATGCTCCTCCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGAAGACA 27783971 Query 69700 TCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGA 69759 || || ||||| || || | |||||| || | |||| |||| |||| || |||||| Sbjct 27783970 TCTGAGTGCCAAGGCTCCAAATATATAGCAAATGCTCCAGGTCTTTTACCACCGCCCTGA 27783911 Query 69760 TCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGG-AATAATACCATTAGATTT 69818 || | || | || |||||| | ||||| | ||| || | |||| ||||| || | Sbjct 27783910 TCAACATAACGCGCGACATTATTAAATACTCTTAACATTGGTACTAAT-CCATTTGAAGT 27783852 Query 69819 ACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTAT 69878 || || |||||| |||| | | ||| | || |||||| || | || || || Sbjct 27783851 GCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAATACAGTGAACATTAAGTCCAAT 27783792 Query 69879 TCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTAT 69938 || |||||| || || || | || || ||| | || | | | || || || || Sbjct 27783791 GCCACCTGCCGACTTTGATATCATTGCGCATTGTTCAACTGATTTAAAAATCCCTTCAAT 27783732 Query 69939 GCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCG 69997 |||| | || ||||| ||||||||| ||||| ||| || | | || | | Sbjct 27783731 TGAATCAGACACTATAGTTAA-AAGAAAACATGAAGACAATTGTGGACGATTTGTGGCTG 27783673 Query 69998 CATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTT 70057 || ||| | || || ||||| ||||| || | ||||| |||| |||||| |||| Sbjct 27783672 CAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGATAGCAAATTGTAGGTTT 27783613 Query 70058 CAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCT 70117 ||| || || || ||||| ||| || ||||| ||||||||||| | || ||||| Sbjct 27783612 CAACTGCAGAATCAATATCTTCGCCATGTATACCTATGGCGACACGCATTAGCAAATGCT 27783553 Query 70118 GAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAA 70177 | |||| |||| | |||| ||||||||| | || || || || || || || | Sbjct 27783552 GTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAATACGACCGCTCAAGTGTCTTGA 27783493 Query 70178 ACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTA 70228 | ||||| ||||| ||| || || | || || |||||| |||| |||| Sbjct 27783492 ATCCAAAGTAGTTATATCCGAAATCGCGATCATATATAATAGCAGAGTTTA 27783442 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 70338 AAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGC 70397 ||||| |||||| ||||| || || | ||| || | || ||||| || || |||| ||| Sbjct 27782619 AAATACTTTTTTAGTTTCTTTATGAAGATTGGAAACTGCGATTCTTGCCGCCAGAAGAGC 27782560 Query 70398 ATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTC 70457 |||||| | ||| || || || || | ||||| |||||||| || || |||| ||||| Sbjct 27782559 ATAGTCCGCATGATGGGTTGTTAAACTGGCTGCAATTTCCGCGGCCAAGTTATCCAATTC 27782500 Query 70458 TATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATT 70506 | || | || ||| || || || | ||||||||||| || |||| Sbjct 27782499 TTGTGTAGACACACCGCAGTAGAGTCCATTAATAACTTTCAGGGTTATT 27782451 >seq4 Length=23952536 Score = 208 bits (230), Expect = 1e-48 Identities = 492/739 (67%), Gaps = 7/739 (1%) Strand=Plus/Plus Query 39317 ACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 39376 || ||||| ||| ||||| ||||| ||||||||| || ||||| ||||| |||| Sbjct 3358153 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3358212 Query 39377 GATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAAT 39436 || || | ||||| || || ||||| | | ||| || |||| || || | | Sbjct 3358213 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3358272 Query 39437 TCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATT 39496 || | || | ||| ||||||||||| || || ||||| | |||||||||| Sbjct 3358273 TCCACCAACAGACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATG 3358332 Query 39497 CCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCT 39556 || || | ||| || || ||||| || || |||||||||| || ||| || || || Sbjct 3358333 CCAATCAATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCA 3358392 Query 39557 GTTAT--TATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTA 39614 | || | || ||| | | |||| || || | |||| ||||| ||||| | Sbjct 3358393 GAGATGATCTCAATGATGC--GCTCACGGCTAGGACGTTGCACCAAATGCCGGAACATCA 3358450 Query 39615 AGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGA 39674 || ||||||||||| | |||||| || | || || || || || || || | Sbjct 3358451 TCACAGCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCA 3358510 Query 39675 GTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGA 39734 | || ||||| |||||||| || || |||||||| || | ||||| ||| ||||| Sbjct 3358511 GACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGA 3358570 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT--ATG 39792 |||| || || || || || || |||| | |||||| || | | | | || ||| Sbjct 3358571 AGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTCGATG 3358630 Query 39793 -TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 ||||| | |||||||| || || ||| ||| ||||||||||| || |||| Sbjct 3358631 AAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCAT 3358690 Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 | || ||||||| ||| | ||| ||| ||||||||| || | || || |||| Sbjct 3358691 TGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTACA 3358750 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 | || || || | || || || || || ||||| || || ||||| | ||||| || | Sbjct 3358751 TCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGGTTA 3358810 Query 39972 TTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGG 40031 |||| ||||| | || | || | | ||| ||||| || || ||||| |||| Sbjct 3358811 TTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAGGCGG 3358870 Query 40032 CAAAAAATGCCAATACATG 40050 |||| || || | ||||| Sbjct 3358871 CAAAGAAGGCGAGCACATG 3358889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686881512547920