Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6 174 1e-38 seq1 127 2e-24 >seq6 Length=26536676 Score = 174 bits (192), Expect = 1e-38 Identities = 352/517 (68%), Gaps = 8/517 (2%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || || ||||| ||||| || | || || |||||||||| ||| ||||||||| ||| Sbjct 8931198 CCGAAGATTGTGAATGGACCACAGATATTGGATAAATATGTGGGTGAATCGGAAGCGAAT 8931257 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 || ||||| |||| || || || ||||| ||| | || || | || | || ||| Sbjct 8931258 GTGCGACGGCTGTTCGCCGAGGCCGAAGAGGAAGAGAAGCGCCTGGGTCCGAACAGTGGA 8931317 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGG-T 19605 |||| || || || | ||||| | || || || || ||||| | || || ||| | Sbjct 8931318 CTGCATATCATCATCTTCGATGAGATCGATGCCATTTGCAAGCAGCGTGGCTCCGTGGCT 8931377 Query 19606 GTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | ||| || || || ||||| || |||||||| || ||| | || | || ||||| Sbjct 8931378 GGCAATAGCGGTGTCCACGACACCGTCGTCAATCAGCTGCTGACCAAGATCGATGGTGTA 8931437 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || |||||||||| || || ||||||||||| ||| ||| ||| | || || Sbjct 8931438 GATCAGTTGAATAATATCTTGGTGATTGGCATGACCAATCGACGGGACATGATCGATGAG 8931497 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || | | || || ||||| |||||| | | || || || | || ||| | || Sbjct 8931498 GCGCTGCTGCGTCCTGGTCGCTTGGAAGTCCAAATGGAGATCAGTTTGCCCAACGAGGAG 8931557 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAAT 19842 ||||| || | || || ||||||||||| | ||||||| | ||| | | | Sbjct 8931558 GGACGCGTCCAGATCTTGAACATACATACGAAACGCATGCGAGACTTCAACAAGATCAGT 8931617 Query 19843 GACGATGTAGA-TCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACT 19901 |||||||| || | || || || |||||| ||||| |||| |||||| || || || Sbjct 8931618 GACGATGTCGACTGCAG-GGAGATCGCAGCGCTCACCAAGAACTTTAGCGGTGCTGAGCT 8931676 Query 19902 TGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 ||||| | ||| |||| || ||||| | |||||| Sbjct 8931677 CGAGGGTCTTGTGCGGGCAGCACAATCGAGCGCAATG 8931713 >seq1 Length=29979347 Score = 127 bits (140), Expect = 2e-24 Identities = 343/514 (67%), Gaps = 22/514 (4%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| ||||| ||||| || | || | | |||||||| ||| ||||||| | || Sbjct 9958240 CCCAAGATTGTGAATGGGCCACAGATTCTGGACAAATATGTGGGTGAATCGGAGGCCAAC 9958299 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | |||||| ||||||| ||||| || || || | || || |||| | || ||| Sbjct 9958300 ATTCGACGTCTGTTTGCCGACGCAGAGGAGGAGGAGAAGCGCCTAGGCCCGAACAGTGGA 9958359 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGGT- 19605 | ||||| || || | |||||| | || || || || ||| | | || || ||| Sbjct 9958360 CTACACATAATCATCTTTGATGAAATCGATGCCATATGCAAGGCACGTGGCTCGGTGGCC 9958419 Query 19606 -GTAAA--TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 |||| ||| ||||||||||| || |||||||| || ||| | || | |||||||| Sbjct 9958420 GGTAACAGTGGCGTACATGACACCGTGGTCAATCAGCTGCTGGCTAAGATTGACGGTGTG 9958479 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGA--CA 19720 | || ||||| || || | || ||||||||||| ||| | ||| | || || | Sbjct 9958480 GAACAGCTGAACAACATACTGGTCATTGGCATGACCAATCGCAGGGATATGATTGATGAA 9958539 Query 19721 GCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAAT 19780 |||| | | || ||||| || |||| | | || ||||||| | | ||| | ||| Sbjct 9958540 GCGC--TGCTTCGGCCCGGCCGCCTGGAGGTGCAAATGGAAATTAGCCTGCCCAACGAAG 9958597 Query 19781 GTGGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGCGACA---AAATAACCT 19835 ||||| || | || | |||||||| ||| || | ||||| | ||||| | Sbjct 9958598 AGGGACGCGTTCAGATCCTCAACATACACACA--AAGCGAATGCGCGAGTTCAATAAGAT 9958655 Query 19836 TTTAAATGACGATGTAGATCTAGAA-GAAATTGCAGCGGCTACCAAAAACTATAGCGGCG 19894 | | |||||| || | | || || |||||||| || || |||| ||||||| Sbjct 9958656 TGCCA---GCGATGTGGA-CAATAAGGAGATTGCAGCATGCACAAAGAACTTCAGCGGCG 9958711 Query 19895 CAGAACTTGAGGGATTAGTGAGGGCCGCCCAATC 19928 | || || ||||| | ||| | || || || || Sbjct 9958712 CTGAGCTCGAGGGTCTGGTGCGTGCTGCTCAGTC 9958745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397440605783890