Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq6 174 1e-38
seq1 127 2e-24
>seq6
Length=26536676
Score = 174 bits (192), Expect = 1e-38
Identities = 352/517 (68%), Gaps = 8/517 (2%)
Strand=Plus/Plus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
|| || ||||| ||||| || | || || |||||||||| ||| ||||||||| |||
Sbjct 8931198 CCGAAGATTGTGAATGGACCACAGATATTGGATAAATATGTGGGTGAATCGGAAGCGAAT 8931257
Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548
|| ||||| |||| || || || ||||| ||| | || || | || | || |||
Sbjct 8931258 GTGCGACGGCTGTTCGCCGAGGCCGAAGAGGAAGAGAAGCGCCTGGGTCCGAACAGTGGA 8931317
Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGG-T 19605
|||| || || || | ||||| | || || || || ||||| | || || ||| |
Sbjct 8931318 CTGCATATCATCATCTTCGATGAGATCGATGCCATTTGCAAGCAGCGTGGCTCCGTGGCT 8931377
Query 19606 GTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662
| ||| || || || ||||| || |||||||| || ||| | || | || |||||
Sbjct 8931378 GGCAATAGCGGTGTCCACGACACCGTCGTCAATCAGCTGCTGACCAAGATCGATGGTGTA 8931437
Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722
| || |||||||||| || || ||||||||||| ||| ||| ||| | || ||
Sbjct 8931438 GATCAGTTGAATAATATCTTGGTGATTGGCATGACCAATCGACGGGACATGATCGATGAG 8931497
Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782
|| | | || || ||||| |||||| | | || || || | || ||| | ||
Sbjct 8931498 GCGCTGCTGCGTCCTGGTCGCTTGGAAGTCCAAATGGAGATCAGTTTGCCCAACGAGGAG 8931557
Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAAT 19842
||||| || | || || ||||||||||| | ||||||| | ||| | | |
Sbjct 8931558 GGACGCGTCCAGATCTTGAACATACATACGAAACGCATGCGAGACTTCAACAAGATCAGT 8931617
Query 19843 GACGATGTAGA-TCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACT 19901
|||||||| || | || || || |||||| ||||| |||| |||||| || || ||
Sbjct 8931618 GACGATGTCGACTGCAG-GGAGATCGCAGCGCTCACCAAGAACTTTAGCGGTGCTGAGCT 8931676
Query 19902 TGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938
||||| | ||| |||| || ||||| | ||||||
Sbjct 8931677 CGAGGGTCTTGTGCGGGCAGCACAATCGAGCGCAATG 8931713
>seq1
Length=29979347
Score = 127 bits (140), Expect = 2e-24
Identities = 343/514 (67%), Gaps = 22/514 (4%)
Strand=Plus/Plus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
||||| ||||| ||||| || | || | | |||||||| ||| ||||||| | ||
Sbjct 9958240 CCCAAGATTGTGAATGGGCCACAGATTCTGGACAAATATGTGGGTGAATCGGAGGCCAAC 9958299
Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548
| |||||| ||||||| ||||| || || || | || || |||| | || |||
Sbjct 9958300 ATTCGACGTCTGTTTGCCGACGCAGAGGAGGAGGAGAAGCGCCTAGGCCCGAACAGTGGA 9958359
Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGGT- 19605
| ||||| || || | |||||| | || || || || ||| | | || || |||
Sbjct 9958360 CTACACATAATCATCTTTGATGAAATCGATGCCATATGCAAGGCACGTGGCTCGGTGGCC 9958419
Query 19606 -GTAAA--TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662
|||| ||| ||||||||||| || |||||||| || ||| | || | ||||||||
Sbjct 9958420 GGTAACAGTGGCGTACATGACACCGTGGTCAATCAGCTGCTGGCTAAGATTGACGGTGTG 9958479
Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGA--CA 19720
| || ||||| || || | || ||||||||||| ||| | ||| | || || |
Sbjct 9958480 GAACAGCTGAACAACATACTGGTCATTGGCATGACCAATCGCAGGGATATGATTGATGAA 9958539
Query 19721 GCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAAT 19780
|||| | | || ||||| || |||| | | || ||||||| | | ||| | |||
Sbjct 9958540 GCGC--TGCTTCGGCCCGGCCGCCTGGAGGTGCAAATGGAAATTAGCCTGCCCAACGAAG 9958597
Query 19781 GTGGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGCGACA---AAATAACCT 19835
||||| || | || | |||||||| ||| || | ||||| | ||||| |
Sbjct 9958598 AGGGACGCGTTCAGATCCTCAACATACACACA--AAGCGAATGCGCGAGTTCAATAAGAT 9958655
Query 19836 TTTAAATGACGATGTAGATCTAGAA-GAAATTGCAGCGGCTACCAAAAACTATAGCGGCG 19894
| | |||||| || | | || || |||||||| || || |||| |||||||
Sbjct 9958656 TGCCA---GCGATGTGGA-CAATAAGGAGATTGCAGCATGCACAAAGAACTTCAGCGGCG 9958711
Query 19895 CAGAACTTGAGGGATTAGTGAGGGCCGCCCAATC 19928
| || || ||||| | ||| | || || || ||
Sbjct 9958712 CTGAGCTCGAGGGTCTGGTGCGTGCTGCTCAGTC 9958745
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397440605783890
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |