Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 116 4e-21 >seq2 Length=27840087 Score = 116 bits (128), Expect = 4e-21 Identities = 386/587 (66%), Gaps = 14/587 (2%) Strand=Plus/Plus Query 104682 AGGAGGCGCG--GTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGA 104738 |||||| || |||| |||||||| || | || | ||||| || ||||| || |||| Sbjct 27784009 AGGAGGAGCATCGTGCACGCGATCTTTTTTTTGCATTGTGGATACCTGATCTTTTTATGA 27784068 Query 104739 AGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCT 104798 | | ||||| | | || | ||||| | | |||||| | || ||||| ||| Sbjct 27784069 AACGTGTTGAAGCTAATGAAGACTGGTCATTAATGTGTCCACATAAATGCCCTGGCCTCC 27784128 Query 104799 CCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGG 104858 | |||| |||||| || |||||| ||| || | || || || ||| || || | Sbjct 27784129 CAGATGTTTGGGGTGAAGATTTTGAAAACCTCTATATCAAATATGAACGAGAGGGACGAG 27784188 Query 104859 CGACTGCGACGGTGCCA--GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGA 104916 ||| | ||| | | | ||| | | ||| || || | | |||||| || Sbjct 27784189 CGAAT-CGA-GTTATTAAGGCTCAATCTCTTTGGTTTGCCATCATTGAATCTCAAGTAGA 27784246 Query 104917 GACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAA 104976 ||||||||| || |||||| | | || ||| | |||||| ||| || || ||| | || Sbjct 27784247 GACTGGTACTCCTTACATGTTATTTAAGGACTCTTGTAACAGAAAAAGCAACCAACAAAA 27784306 Query 104977 TTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGA 105036 | | || || || | ||||| || |||||||| | |||| | | | ||| Sbjct 27784307 TGTTGGAACTATAAAATGCAGTAATCTGTGCACAGAAATAGTTGAATATTCGGCACCAGA 27784366 Query 105037 TGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGAC 105096 ||| | ||||||||||| | || || ||||| || | || ||| || ||| || Sbjct 27784367 TGAAATAGCTGTGTGTAATTTGGCGTCTATCGCACTTAATATGTTTGT-GACGCAG-GAG 27784424 Query 105097 AAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAA 105156 ||| | | ||| | | |||| || | ||||| || |||| || || |||||| |||| Sbjct 27784425 AAA-TCTTATGACTTTAAAAAGCTTAAAGAAGTAACTAAAATCGTTACGAAAAACTTAAA 27784483 Query 105157 CAGAGTTATTGATAGAAATTTTTACCCCGTTG--AGACTGCTCGTAAATCTAATATGAGA 105214 | | | ||||||| ||||| || ||| ||| ||| ||| ||||| ||| | | Sbjct 27784484 TAAAATAATTGATATAAATTACTA-CCCTTTGCCAGA-AGCTAAAAAATCAAATTTACGT 27784541 Query 105215 CACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT 105261 |||||||| |||||| | || || || || | ||||| | ||| || Sbjct 27784542 CACCGTCCTATTGGTATTGGAGTCCAAGGGTTTGCGGACGCATTAAT 27784588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583237629964720