Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq4 87.8 2e-12
>seq4
Length=23952536
Score = 87.8 bits (96), Expect = 2e-12
Identities = 341/530 (64%), Gaps = 11/530 (2%)
Strand=Plus/Minus
Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672
||||||||| | || || ||| | || ||| | |||| ||| || |||| || | |
Sbjct 3358976 TCATTCTGGACTGTGGAAGAGGTGGATCTCTCTAAAGACTTGACCGACTGGG-CACGTTT 3358918
Query 59673 AATT-ACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGG 59731
|| | | |||||| || || ||| || || |||||||| || || |||||
Sbjct 3358917 AACTGATAACGAGCGTCACTTTATCTCCCATGTGCTCGCCTTCTTTGCCGCCTCCGATGG 3358858
Query 59732 AATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCG 59791
||||| | || ||| | | | | ||| | |||| || || || |||| || ||
Sbjct 3358857 CATTGTTAATGAGAATCTTGTCGAGCGCTTCAGCCAGGAGGTGCAAATAACCGAAGCTCG 3358798
Query 59792 GTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCA 59850
| ||||| | | ||| ||| || ||| | | ||||| |||| |||| |
Sbjct 3358797 TTGTTTCTATGGCTTTCAAATCGC-CATGGAGAATGTGCACTCGGAGATGTACAGCGTGC 3358739
Query 59851 TGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGA 59910
||||||||| | | | |||||| | || || | ||||||| |||||| || |
Sbjct 3358738 TGATCGATACATATATTAGGGATCCACAGGAACGGGATTATCTGTTCAATGCCATTGAAA 3358679
Query 59911 CGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGA---- 59966
| ||||| || || | ||| || || ||||| | ||||| || | ||
Sbjct 3358678 CAATGCCCGCTGTCAAGCGAAAGGCCGATTGGGCGCTCTCTTGGATT--TCATCGAAGGC 3358621
Query 59967 -GCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGG 60025
|| |||| | | |||| || || || |||||| ||||||||||| |||
Sbjct 3358620 GGCGAACTTTGGCGAGAGAATCATTGCGTTCGCTGCCGTGGAGGGAATCTTCTTTAGTGG 3358561
Query 60026 CTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTC 60085
| || | || || ||||| || || ||||| || ||||| || |||| |||||
Sbjct 3358560 CAGCTTTGCCTCGATCTTTTGGCTGAAGAAACGTGGTCTGATGCCCGGTCTGACCTTCTC 3358501
Query 60086 CAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGA 60135
||| ||| |||| || || ||||||||| | ||| || ||||| ||||
Sbjct 3358500 CAATGAGTTGATCTCACGCGACGAGGGCTTGCATTGTGACTTTGCTGTGA 3358451
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548503009852320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |