Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4 87.8 2e-12 >seq4 Length=23952536 Score = 87.8 bits (96), Expect = 2e-12 Identities = 341/530 (64%), Gaps = 11/530 (2%) Strand=Plus/Minus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 ||||||||| | || || ||| | || ||| | |||| ||| || |||| || | | Sbjct 3358976 TCATTCTGGACTGTGGAAGAGGTGGATCTCTCTAAAGACTTGACCGACTGGG-CACGTTT 3358918 Query 59673 AATT-ACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGG 59731 || | | |||||| || || ||| || || |||||||| || || ||||| Sbjct 3358917 AACTGATAACGAGCGTCACTTTATCTCCCATGTGCTCGCCTTCTTTGCCGCCTCCGATGG 3358858 Query 59732 AATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCG 59791 ||||| | || ||| | | | | ||| | |||| || || || |||| || || Sbjct 3358857 CATTGTTAATGAGAATCTTGTCGAGCGCTTCAGCCAGGAGGTGCAAATAACCGAAGCTCG 3358798 Query 59792 GTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCA 59850 | ||||| | | ||| ||| || ||| | | ||||| |||| |||| | Sbjct 3358797 TTGTTTCTATGGCTTTCAAATCGC-CATGGAGAATGTGCACTCGGAGATGTACAGCGTGC 3358739 Query 59851 TGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGA 59910 ||||||||| | | | |||||| | || || | ||||||| |||||| || | Sbjct 3358738 TGATCGATACATATATTAGGGATCCACAGGAACGGGATTATCTGTTCAATGCCATTGAAA 3358679 Query 59911 CGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGA---- 59966 | ||||| || || | ||| || || ||||| | ||||| || | || Sbjct 3358678 CAATGCCCGCTGTCAAGCGAAAGGCCGATTGGGCGCTCTCTTGGATT--TCATCGAAGGC 3358621 Query 59967 -GCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGG 60025 || |||| | | |||| || || || |||||| ||||||||||| ||| Sbjct 3358620 GGCGAACTTTGGCGAGAGAATCATTGCGTTCGCTGCCGTGGAGGGAATCTTCTTTAGTGG 3358561 Query 60026 CTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTC 60085 | || | || || ||||| || || ||||| || ||||| || |||| ||||| Sbjct 3358560 CAGCTTTGCCTCGATCTTTTGGCTGAAGAAACGTGGTCTGATGCCCGGTCTGACCTTCTC 3358501 Query 60086 CAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGA 60135 ||| ||| |||| || || ||||||||| | ||| || ||||| |||| Sbjct 3358500 CAATGAGTTGATCTCACGCGACGAGGGCTTGCATTGTGACTTTGCTGTGA 3358451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548503009852320