Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq6 178 1e-39 seq3 165 9e-36 seq2 154 2e-32 >seq6 Length=26536676 Score = 178 bits (196), Expect = 1e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || |||||||| || ||| | ||||||||| | Sbjct 9462448 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCCTCG 9462389 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | ||||| || || || ||||||||||| ||||| ||||| ||| Sbjct 9462388 GACACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 9462329 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || ||||||| || || || | ||||| || Sbjct 9462328 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTAYAAC 9462269 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || |||||||| ||| | ||||| || ||||| Sbjct 9462268 ATCCAGAAGGAGTCGACCCTTCATCTGGTCCTCCGTCTGCGTGGTGG 9462222 Score = 140 bits (154), Expect = 4e-28 Identities = 177/241 (73%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || ||||| || || || | ||||| ||| | Sbjct 9462220 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACCTTGGAGGTCGAGCCCTCG 9462161 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || || ||||||||||| ||||| ||||| ||| Sbjct 9462160 GACACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 9462101 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || ||||||| || || || | ||||| || Sbjct 9462100 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 9462041 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAAGT 27645 |||| ||||| || ||| | || | || | ||||| || ||||| ||| ||||| | Sbjct 9462040 ATCCAGAAGGAGTCTACTTTGCACTTGGTGCTCCGTCTACGTGGTGG-CAA--TTAAATT 9461984 Query 27646 T 27646 | Sbjct 9461983 T 9461983 >seq3 Length=22052390 Score = 165 bits (182), Expect = 9e-36 Identities = 178/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 27397 ATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTT 27456 ||||| | |||||| ||||| || || || | || || ||||| || || | |||||| Sbjct 1974936 ATTACCAAAATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCTTGGAGGTT 1974995 Query 27457 GAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCT 27516 ||| | |||| ||||| || | ||||| || ||||| || |||||||||||||| Sbjct 1974996 GAGCCTTCCGATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAGGGAATTCCA 1975055 Query 27517 CCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCA 27576 ||||| ||||||||||| || || || || |||||||| || |||| || ||| | | Sbjct 1975056 CCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGCCGCACCTTGTCT 1975115 Query 27577 GACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| ||| |||| ||||| || || |||||||| ||| | ||||| || ||||| Sbjct 1975116 GACTACAATATCCAGAAGGAGTCGACCCTTCATCTGGTCCTCCGTCTGCGTGGTGG 1975171 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || |||||||||||||| || ||||| ||||| ||||||||||| || || || || ||| Sbjct 1975317 AAGATTCAGGACAAGGAAGGTATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 1975376 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||| || |||| ||| ||||| | || || || | |||||||| || || |||||| Sbjct 1975377 CAACTGGAAGATGGTCGCACCCTGTCCGATTACAACATTCAAAAGGAGTCTACCCTTCAT 1975436 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||| || || || Sbjct 1975437 TTGGTACTGCGTCTGCGTGGCGG 1975459 >seq2 Length=27840087 Score = 154 bits (170), Expect = 2e-32 Identities = 182/244 (75%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 27390 CAGAAATA-TTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTC 27448 |||||| | |||| | |||||||||||| || || || || ||||||||||| |||||| Sbjct 185355 CAGAAACAGTTACAA-AATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATTACTT 185413 Query 27449 TTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGG 27508 | ||||| ||| | ||| | ||| | ||| | ||||| || || || ||||| |||| Sbjct 185414 TGGAGGTCGAGCCCTCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGG 185473 Query 27509 GAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTA 27568 |||| || ||||| ||||||||||| || || || || ||||| || ||||||| || | Sbjct 185474 GAATCCCACCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCA 185533 Query 27569 CCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCG 27628 | || | ||||| || | || ||||| |||||| | || | || | ||||| || | Sbjct 185534 CTCTGTCCGACTACAACATTCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTGCGTG 185593 Query 27629 GTGG 27632 |||| Sbjct 185594 GTGG 185597 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| || || || || || ||||| || ||||||||||| || | Sbjct 14207673 AATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACCGTC 14207614 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | ||| | || || || || |||||||| || |||||||||||||| || Sbjct 14207613 GGATACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCA 14207554 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||||||||| |||||||| |||||| | || |||| ||| || || | ||||| || Sbjct 14207553 GCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTACAA 14207494 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| || || || | || | || | || ||||| ||||| Sbjct 14207493 CATCCAAAAAGAGTCAACCTTGCACTTGGTGCTCCGCCTTCGTGGTGG 14207446 Score = 107 bits (118), Expect = 2e-18 Identities = 278/422 (66%), Gaps = 4/422 (1%) Strand=Plus/Minus Query 31983 GGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTC 32042 ||| ||||| |||||| ||||| |||||||| | | ||| ||||| ||| Sbjct 27135296 GGATGGCCTAAAGCCTGGTCAGCGTAAGGTGATGTTTACGTGCTTCAAGCGTAACGACAA 27135237 Query 32043 GAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCA 32102 ||| || | || || || ||||| || || | ||||| || | || || || || Sbjct 27135236 GAGGGAGGTTAAAGTTGCTCAGCTATCCGGGTCGGTGGCCGAAATGTCAGCATACCATCA 27135177 Query 32103 CGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAA 32162 ||||||| ||| || ||| || || || || | || ||||| |||||||| | || Sbjct 27135176 CGGCGAGATGTCCCTGCAGATGACTATAGTAAATTTGGCGCAGAATTTTGTCGGATCGAA 27135117 Query 32163 TAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGA 32222 || | || || || || || || ||||| || || || | ||||||| || || Sbjct 27135116 CAATATCAATTTGCTGGAACCTCGCGGTCAGTTCGGCACACGTTTGACCGGTGGTAAAGA 27135057 Query 32223 TGCTGCGAGCTCCCGTTACATCTTCAC--CCGTCTCGCACCTTCGACGCGCAAGATTTTC 32280 | ||| ||| | |||||||||||||| | |||| ||| || || || | Sbjct 27135056 TTGTGCAAGCGCTCGTTACATCTTCACATTGATGTCGCCTCTT--ACACGACTCATATAT 27134999 Query 32281 GACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCG 32340 |||| | ||| ||| | |||| |||| | | || ||||| ||||| | || || Sbjct 27134998 CACCCATTGGATGATCCTTTGCTGCAGTATCAGGTGGACGACGGCCAGCGCATTGAACCC 27134939 Query 32341 GTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACG 32400 ||| || | || | |||| ||| |||||||||| || || || |||||||| || Sbjct 27134938 TTGTGGTATATACCTATTATTCCAATGGTCTTGGTGAATGGCGCCGAGGGCATCGGCACC 27134879 Query 32401 GG 32402 || Sbjct 27134878 GG 27134877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570287744419360