Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq6 93.3 3e-14
seq3 93.3 3e-14
>seq6
Length=26536676
Score = 93.3 bits (102), Expect = 3e-14
Identities = 154/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| || | ||| |||||| || ||||| || || || || || ||
Sbjct 9462003 AGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 9462062
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || || || || || | |||||| || || || || | ||||||
Sbjct 9462063 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCC 9462122
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||| || | ||||| | ||| ||||| | ||| || |||| |||
Sbjct 9462123 TTGTCTTGGATC-TTGGCCTTAACATTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGT 9462181
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| ||||| || || || || || || || |||||||||
Sbjct 9462182 GATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 9462221
>seq3
Length=22052390
Score = 93.3 bits (102), Expect = 3e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | ||||||| |||||||| || || ||||||||||||||| ||||| ||
Sbjct 1975459 CCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGAC 1975400
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | ||||| ||||| || ||||| || || | |||||| || || || ||
Sbjct 1975399 AGGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1975340
Query 34600 ACTCCCTCCTTGTC 34613
| || ||||||||
Sbjct 1975339 ATACCTTCCTTGTC 1975326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314717409932474
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |