Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq4 210 2e-49
seq2 161 9e-35
seq3 140 3e-28
seq6 123 2e-23
>seq4
Length=23952536
Score = 210 bits (232), Expect = 2e-49
Identities = 223/293 (76%), Gaps = 6/293 (2%)
Strand=Plus/Plus
Query 135474 TGTGGAACGCGGCACAACGGCAGCTT---AAGCGAGAAGGCAAAATGCACGGATTTATGC 135530
|||||||| |||| || | |||||| ||| ||||||||||||||||| ||| |||
Sbjct 633119 TGTGGAACTCGGCCCAGCTGCAGCTGGTCAAG---GAAGGCAAAATGCACGGGTTTCTGC 633175
Query 135531 GCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAAC 135590
||||||||||||| |||||||| || || ||| | | | |||| | | ||||||| |
Sbjct 633176 GCATGTATTGGGCCAAAAAGATTTTAGAGTGGACCGAAACGCCGGAACAGGCGCTTGAGT 633235
Query 135591 ACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAG 135650
| ||||| || || || | |||||| | |||||||| ||| | ||||||||||| |
Sbjct 633236 ATAGCATATTATTGAACGACAAGTACAGTCTGGATGGACGTGATCCGAATGGCTACGTTG 633295
Query 135651 GTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTG 135710
|||| |||||||| || | || | ||||| ||||| |||||||||||| | ||||
Sbjct 633296 GTTGCATGTGGTCCATCGGTGGGATTCACGACCAAGGTTGGAAGGAGCGCGCGATATTTG 633355
Query 135711 GCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAAT 135763
| ||||||||||||||||||||| | || || | |||| ||| |||| |||
Sbjct 633356 GTAAGATTCGCTATATGAACTATCAAGGCTGCAAGCGAAAGTTTGATGTCAAT 633408
>seq2
Length=27840087
Score = 161 bits (178), Expect = 9e-35
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||| || || || ||| | || |||||||| || ||||||||
Sbjct 14207672 ATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 14207613
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || |||| |||||| || || || ||||||||||| || || || |||||
Sbjct 14207612 GATACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 14207553
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| |||| | || ||||| ||||||||||| || || ||||||| ||||||
Sbjct 14207552 CAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTACAAC 14207493
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| ||||| ||||| ||||| || ||||| | || | || |||||
Sbjct 14207492 ATCCAAAAAGAGTCAACCTTGCACTTGGTGCTCCGCCTTCGTGGTGG 14207446
Score = 154 bits (170), Expect = 1e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || |||||||| ||||||||| | |||||| | || || || || ||
Sbjct 185371 ATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATTACTTTGGAGGTCGAGCCCTCT 185430
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| ||||| || || ||||||||||| || || ||||| |||||
Sbjct 185431 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAG 185490
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||||||||| || |||| || | || | ||||| ||||||
Sbjct 185491 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 185550
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| |||||||| || || || ||||| | ||| |||| ||||||||
Sbjct 185551 ATTCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTGCGTGGTGGCAT 185600
>seq3
Length=22052390
Score = 140 bits (154), Expect = 3e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || |||||| |||| || ||| | || || | || || || || |||
Sbjct 1974945 ATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCTTGGAGGTTGAGCCTTCC 1975004
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||||| ||||| || |||||||| || || || || ||||| |||||
Sbjct 1975005 GATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAGGGAATTCCACCAGATCAG 1975064
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||||||||| ||| ||||||| | ||| | || || |||||
Sbjct 1975065 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGCCGCACCTTGTCTGACTACAAT 1975124
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||||||| | ||| |||| | ||| |||| ||||| ||
Sbjct 1975125 ATCCAGAAGGAGTCGACCCTTCATCTGGTCCTCCGTCTGCGTGGTGGTAT 1975174
Score = 127 bits (140), Expect = 2e-24
Identities = 114/143 (80%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131
|| ||||| ||||| ||||| || || || ||||| |||||| | || | |||||||||
Sbjct 1975317 AAGATTCAGGACAAGGAAGGTATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 1975376
Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191
||| ||||||| || ||| | |||||||||||||||||||||||||| ||| | |||
Sbjct 1975377 CAACTGGAAGATGGTCGCACCCTGTCCGATTACAACATTCAAAAGGAGTCTACCCTTCAT 1975436
Query 27192 TTGGTTTTGCGTTTGCGGGGTGG 27214
||||| ||||| |||| || ||
Sbjct 1975437 TTGGTACTGCGTCTGCGTGGCGG 1975459
>seq6
Length=26536676
Score = 123 bits (136), Expect = 2e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || ||| |||| |||||| | || ||| | || || || || ||
Sbjct 9462448 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCCTCG 9462389
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | || || || || |||||||| || || || || || |||||
Sbjct 9462388 GACACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 9462329
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||| ||||| || |||| || | || | ||||| || |||
Sbjct 9462328 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTAYAAC 9462269
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||||||| | ||| |||| | ||| |||| ||||||||
Sbjct 9462268 ATCCAGAAGGAGTCGACCCTTCATCTGGTCCTCCGTCTGCGTGGTGGCAT 9462219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434901122866560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |