Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4 210 2e-49 seq2 161 9e-35 seq3 140 3e-28 seq6 123 2e-23 >seq4 Length=23952536 Score = 210 bits (232), Expect = 2e-49 Identities = 223/293 (76%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 135474 TGTGGAACGCGGCACAACGGCAGCTT---AAGCGAGAAGGCAAAATGCACGGATTTATGC 135530 |||||||| |||| || | |||||| ||| ||||||||||||||||| ||| ||| Sbjct 633119 TGTGGAACTCGGCCCAGCTGCAGCTGGTCAAG---GAAGGCAAAATGCACGGGTTTCTGC 633175 Query 135531 GCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAAC 135590 ||||||||||||| |||||||| || || ||| | | | |||| | | ||||||| | Sbjct 633176 GCATGTATTGGGCCAAAAAGATTTTAGAGTGGACCGAAACGCCGGAACAGGCGCTTGAGT 633235 Query 135591 ACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAG 135650 | ||||| || || || | |||||| | |||||||| ||| | ||||||||||| | Sbjct 633236 ATAGCATATTATTGAACGACAAGTACAGTCTGGATGGACGTGATCCGAATGGCTACGTTG 633295 Query 135651 GTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTG 135710 |||| |||||||| || | || | ||||| ||||| |||||||||||| | |||| Sbjct 633296 GTTGCATGTGGTCCATCGGTGGGATTCACGACCAAGGTTGGAAGGAGCGCGCGATATTTG 633355 Query 135711 GCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAAT 135763 | ||||||||||||||||||||| | || || | |||| ||| |||| ||| Sbjct 633356 GTAAGATTCGCTATATGAACTATCAAGGCTGCAAGCGAAAGTTTGATGTCAAT 633408 >seq2 Length=27840087 Score = 161 bits (178), Expect = 9e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || || ||| | || |||||||| || |||||||| Sbjct 14207672 ATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 14207613 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| |||||| || || || ||||||||||| || || || ||||| Sbjct 14207612 GATACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 14207553 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| |||| | || ||||| ||||||||||| || || ||||||| |||||| Sbjct 14207552 CAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTACAAC 14207493 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||| ||||| ||||| || ||||| | || | || ||||| Sbjct 14207492 ATCCAAAAAGAGTCAACCTTGCACTTGGTGCTCCGCCTTCGTGGTGG 14207446 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| ||||||||| | |||||| | || || || || || Sbjct 185371 ATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATTACTTTGGAGGTCGAGCCCTCT 185430 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||||||||| || || ||||| ||||| Sbjct 185431 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAG 185490 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| || | || | ||||| |||||| Sbjct 185491 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 185550 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || || || ||||| | ||| |||| |||||||| Sbjct 185551 ATTCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTGCGTGGTGGCAT 185600 >seq3 Length=22052390 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||| |||| || ||| | || || | || || || || ||| Sbjct 1974945 ATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCTTGGAGGTTGAGCCTTCC 1975004 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| ||||| || |||||||| || || || || ||||| ||||| Sbjct 1975005 GATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAGGGAATTCCACCAGATCAG 1975064 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| ||| ||||||| | ||| | || || ||||| Sbjct 1975065 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGCCGCACCTTGTCTGACTACAAT 1975124 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | ||| |||| | ||| |||| ||||| || Sbjct 1975125 ATCCAGAAGGAGTCGACCCTTCATCTGGTCCTCCGTCTGCGTGGTGGTAT 1975174 Score = 127 bits (140), Expect = 2e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || ||||| ||||| ||||| || || || ||||| |||||| | || | ||||||||| Sbjct 1975317 AAGATTCAGGACAAGGAAGGTATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 1975376 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 ||| ||||||| || ||| | |||||||||||||||||||||||||| ||| | ||| Sbjct 1975377 CAACTGGAAGATGGTCGCACCCTGTCCGATTACAACATTCAAAAGGAGTCTACCCTTCAT 1975436 Query 27192 TTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| ||||| |||| || || Sbjct 1975437 TTGGTACTGCGTCTGCGTGGCGG 1975459 >seq6 Length=26536676 Score = 123 bits (136), Expect = 2e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| |||||| | || ||| | || || || || || Sbjct 9462448 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCCTCG 9462389 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || |||||||| || || || || || ||||| Sbjct 9462388 GACACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 9462329 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || |||| || | || | ||||| || ||| Sbjct 9462328 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTAYAAC 9462269 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | ||| |||| | ||| |||| |||||||| Sbjct 9462268 ATCCAGAAGGAGTCGACCCTTCATCTGGTCCTCCGTCTGCGTGGTGGCAT 9462219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434901122866560