Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq3 93.3 3e-14 seq2 91.5 1e-13 >seq3 Length=22052390 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| |||| || ||||| || | || || ||||| || ||| |||| Sbjct 1975326 GACAAGGAAGGTATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAA 1975385 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| | |||||||||||||||| ||||| ||| || | |||||||| || Sbjct 1975386 GATGGTCGCACCCTGTCCGATTACAACATTCAAAAGGAGTCTACCCTTCATTTGGTACTG 1975445 Query 28003 CGTTTGCGTGGCGG 28016 ||| |||||||||| Sbjct 1975446 CGTCTGCGTGGCGG 1975459 >seq2 Length=27840087 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||| ||||| || || || || || || |||| |||||| | Sbjct 14207673 AATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAA----C 14207618 Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 || || ||| |||| |||||| || || ||||||||||| |||| Sbjct 14207617 CGTCGGA-TACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCA 14207559 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || |||| ||||| || || |||||||| || | |||| | ||||| Sbjct 14207558 GATCAGCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGAC 14207499 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||||||| || ||||| ||||| | || | ||||| || Sbjct 14207498 TACAACATCCAAAAAGAGTCAACCTTGCACTTGGTGCTCCGCCTTCGTGGTGG 14207446 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| || || |||||||| || || || ||||| | || ||||| | Sbjct 185368 AAAATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATTACTTTGGAGGTCGAGCCC 185427 Query 27847 ACCG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | | || || | ||| ||||| || || |||||||| || | || | Sbjct 185428 TCTGACACCATCGAGAAT--GTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAG 185485 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || || ||||| || || |||| || | ||||| ||||||| | Sbjct 185486 ATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACT 185545 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| || || ||| ||||||||| ||||| | ||| ||||||| ||| Sbjct 185546 ACAACATTCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTGCGTGGTGGC 185598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355848616782006