Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq3 93.3 3e-14
seq2 91.5 1e-13
>seq3
Length=22052390
Score = 93.3 bits (102), Expect = 3e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| |||||| |||| || ||||| || | || || ||||| || ||| ||||
Sbjct 1975326 GACAAGGAAGGTATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAA 1975385
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | |||| | |||||||||||||||| ||||| ||| || | |||||||| ||
Sbjct 1975386 GATGGTCGCACCCTGTCCGATTACAACATTCAAAAGGAGTCTACCCTTCATTTGGTACTG 1975445
Query 28003 CGTTTGCGTGGCGG 28016
||| ||||||||||
Sbjct 1975446 CGTCTGCGTGGCGG 1975459
>seq2
Length=27840087
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/233 (69%), Gaps = 10/233 (4%)
Strand=Plus/Minus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
|||||| || ||||| ||||| || || || || || || |||| |||||| |
Sbjct 14207673 AATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAA----C 14207618
Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903
|| || ||| |||| |||||| || || ||||||||||| ||||
Sbjct 14207617 CGTCGGA-TACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCA 14207559
Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963
|| ||||| || |||| ||||| || || |||||||| || | |||| | |||||
Sbjct 14207558 GATCAGCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGAC 14207499
Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||||||||||||| || ||||| ||||| | || | ||||| ||
Sbjct 14207498 TACAACATCCAAAAAGAGTCAACCTTGCACTTGGTGCTCCGCCTTCGTGGTGG 14207446
Score = 86.0 bits (94), Expect = 4e-12
Identities = 160/233 (69%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
||||||||||| || || |||||||| || || || ||||| | || ||||| |
Sbjct 185368 AAAATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATTACTTTGGAGGTCGAGCCC 185427
Query 27847 ACCG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
| | || || | ||| ||||| || || |||||||| || | || |
Sbjct 185428 TCTGACACCATCGAGAAT--GTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAG 185485
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| ||||| || | || || ||||| || || |||| || | ||||| ||||||| |
Sbjct 185486 ATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACT 185545
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017
||||||| || || ||| ||||||||| ||||| | ||| ||||||| |||
Sbjct 185546 ACAACATTCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTGCGTGGTGGC 185598
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355848616782006
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |