Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq2 172 1e-37
seq6 165 2e-35
seq3 145 2e-29
>seq2
Length=27840087
Score = 172 bits (190), Expect = 1e-37
Identities = 172/223 (77%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | ||| | || ||||||||||||||||| || || | ||| ||
Sbjct 14207451 ACGAAGGCGGAGCACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGT 14207510
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| |||||||||| |||||||| || ||||| || || || || || ||||||| |||
Sbjct 14207511 GCGACCATCTTCCAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCC 14207570
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||| |||||||||||||| ||| || || |||||||| || || ||| ||||| ||
Sbjct 14207571 TTCTTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAG 14207630
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|||||| ||||| ||||| || || || ||||| | |||||||
Sbjct 14207631 AGTGATGGTCTTACCCGTTAGGGTTTTAACAAAGATCTGCATT 14207673
Score = 149 bits (164), Expect = 1e-30
Identities = 162/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| | ||||||||| || || ||||| || || | || || | ||||||
Sbjct 185582 AGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 185523
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| |||||||| || || || || || || || | ||| || |||||
Sbjct 185522 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCT 185463
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||||||||||||| || ||||| | ||| || |||
Sbjct 185462 TGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAAGTAATGGTC 185403
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || |||||||| || || || | ||||||||
Sbjct 185402 TTGCCGGTGAGAGTTTTAACGAAGATTTGCATTTT 185368
>seq6
Length=26536676
Score = 165 bits (182), Expect = 2e-35
Identities = 165/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || ||||| || ||||| || |||||||| || || | || || | ||||||
Sbjct 9462237 AGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTRTAGTCGGACAGAGTGCGTCCATCC 9462296
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| |||||||| || || || || || || |||| || ||||||||
Sbjct 9462297 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCT 9462356
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || ||||| |||||||| ||| |||||||| | |||||| |||
Sbjct 9462357 TGGATCTTGGCCTTAACATTTTCAATGGTGTCCGAGGGCTCAACCTCCAAAGTGATGGTC 9462416
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || || | |||||| || || | |||||| ||
Sbjct 9462417 TTGCCAGTCAAAGTCTTGACGAAGATCTGCATATT 9462451
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| | ||| ||||| || |||||||| || || | || || | ||||||
Sbjct 9462009 AGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCC 9462068
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| |||||||| || || || || || || |||| || ||||||||
Sbjct 9462069 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCT 9462128
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || || |||||||| ||| || ||||| | ||||| ||
Sbjct 9462129 TGGATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTT 9462188
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || | |||||| || || | ||||||
Sbjct 9462189 TTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 9462220
>seq3
Length=22052390
Score = 145 bits (160), Expect = 2e-29
Identities = 161/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || ||||| || ||||| || ||||| || || || | | ||| | ||||||
Sbjct 1975156 AGGACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAGGTGCGGCCATCT 1975097
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||| |||||||| |||||||| || || || || || || |||| ||| ||||| ||
Sbjct 1975096 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATTCCCTCCTTATCT 1975037
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || ||||| || ||||| || || |||||||| | ||||| |||
Sbjct 1975036 TGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAGGTGATGGTC 1974977
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|||||||| | ||| || || || | |||||||||
Sbjct 1974976 TTTCCCGTCAAAGTTTTAACGAAGATCTGCATTTT 1974942
Score = 111 bits (122), Expect = 4e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
||||| || ||||| ||||| ||||| ||||| | ||||| | ||||||||||| |||
Sbjct 1975435 TGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAGGGTGCGACCATCTTCCAGTTGC 1975376
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
||||| |||||||| || || || || || || |||| |||||||||||||| |||||
Sbjct 1975375 TTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAATCTT 1975317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159104801503970
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |