Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2 172 1e-37 seq6 165 2e-35 seq3 145 2e-29 >seq2 Length=27840087 Score = 172 bits (190), Expect = 1e-37 Identities = 172/223 (77%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| | || ||||||||||||||||| || || | ||| || Sbjct 14207451 ACGAAGGCGGAGCACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGT 14207510 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| |||||||| || ||||| || || || || || ||||||| ||| Sbjct 14207511 GCGACCATCTTCCAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCC 14207570 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| |||||||||||||| ||| || || |||||||| || || ||| ||||| || Sbjct 14207571 TTCTTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAG 14207630 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||| ||||| ||||| || || || ||||| | ||||||| Sbjct 14207631 AGTGATGGTCTTACCCGTTAGGGTTTTAACAAAGATCTGCATT 14207673 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| | ||||||||| || || ||||| || || | || || | |||||| Sbjct 185582 AGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 185523 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || || || || || | ||| || ||||| Sbjct 185522 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCT 185463 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||||||| || ||||| | ||| || ||| Sbjct 185462 TGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAAGTAATGGTC 185403 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || |||||||| || || || | |||||||| Sbjct 185402 TTGCCGGTGAGAGTTTTAACGAAGATTTGCATTTT 185368 >seq6 Length=26536676 Score = 165 bits (182), Expect = 2e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| || ||||| || |||||||| || || | || || | |||||| Sbjct 9462237 AGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTRTAGTCGGACAGAGTGCGTCCATCC 9462296 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || || || || |||| || |||||||| Sbjct 9462297 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCT 9462356 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || ||||| |||||||| ||| |||||||| | |||||| ||| Sbjct 9462357 TGGATCTTGGCCTTAACATTTTCAATGGTGTCCGAGGGCTCAACCTCCAAAGTGATGGTC 9462416 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || | |||||| || || | |||||| || Sbjct 9462417 TTGCCAGTCAAAGTCTTGACGAAGATCTGCATATT 9462451 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| | ||| ||||| || |||||||| || || | || || | |||||| Sbjct 9462009 AGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCC 9462068 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || || || || |||| || |||||||| Sbjct 9462069 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCT 9462128 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || |||||||| ||| || ||||| | ||||| || Sbjct 9462129 TGGATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTT 9462188 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | |||||| || || | |||||| Sbjct 9462189 TTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 9462220 >seq3 Length=22052390 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| || ||||| || ||||| || || || | | ||| | |||||| Sbjct 1975156 AGGACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAGGTGCGGCCATCT 1975097 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| |||||||| |||||||| || || || || || || |||| ||| ||||| || Sbjct 1975096 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATTCCCTCCTTATCT 1975037 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| || ||||| || || |||||||| | ||||| ||| Sbjct 1975036 TGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAGGTGATGGTC 1974977 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||||| | ||| || || || | ||||||||| Sbjct 1974976 TTTCCCGTCAAAGTTTTAACGAAGATCTGCATTTT 1974942 Score = 111 bits (122), Expect = 4e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || ||||| ||||| ||||| ||||| | ||||| | ||||||||||| ||| Sbjct 1975435 TGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAGGGTGCGACCATCTTCCAGTTGC 1975376 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||||| |||||||| || || || || || || |||| |||||||||||||| ||||| Sbjct 1975375 TTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAATCTT 1975317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159104801503970