Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq2 93.3 4e-14
>seq2
Length=27840087
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | |||||| || | || ||||||||| || || || |||| ||| || || |
Sbjct 14207457 GCGGAGCACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACC 14207516
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
|| || | || ||||| ||||| || ||||||||||| || | || | | |||||
Sbjct 14207517 ATCTTCCAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTT 14207576
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248
|||| ||| || ||||| || | | ||||| || || || || | |||||
Sbjct 14207577 GTCCTGGATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGAT 14207636
Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || ||||| || |||||||||||||| |||||
Sbjct 14207637 GGTCTTACCCGTTAGGGTTTTAACAAAGATCTGCAT 14207672
Score = 82.4 bits (90), Expect = 7e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || | ||| ||| || || || || || |||| || || ||| | || ||
Sbjct 185580 CACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 185521
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193
||||| ||||| || || || ||||||||||| || |||||| | | |||||||||
Sbjct 185520 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGG-ATTCCCTCTTTGTCTT 185462
Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| || |||| || | | || || | ||| || |||| || || | |
Sbjct 185461 GGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAAGTAATGGTCT 185402
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
| || || || |||||||| ||||||||||| ||
Sbjct 185401 TGCCGGTGAGAGTTTTAACGAAGATTTGCATTTT 185368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429528962893514
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |