Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2 140 2e-28 seq3 102 6e-17 >seq2 Length=27840087 Score = 140 bits (154), Expect = 2e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || ||||||||||| ||||| || || |||||||| || || || | | Sbjct 14207673 AATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACCGTC 14207614 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| || | || ||| | ||| | || | | ||||||||||| | || ||||||| Sbjct 14207613 GGATACCATCGAGAATGTCAAAGCCAAGA-TCCAGGACAAAGAAGGAATTCCTCCAGATC 14207555 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||| |||| ||||| ||||| ||| ||||||| | |||||| | ||| |||| Sbjct 14207554 AGCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTACA 14207495 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||| ||||||||||| || || || || || Sbjct 14207494 ACATCCAAAAAGAGTCAACCTTGCACTTGGT 14207464 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||||||||| ||||| || || || || ||| | || || || || Sbjct 185368 AAAATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATTACTTTGGAGGTCGAGCCC 185427 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || || |||||||| || | || ||||| Sbjct 185428 TCTGACACCATCGAGAATGTCAAGGC-CAAGATCCAAGACAAAGAGGGAATCCCACCAGA 185486 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || |||||||| || ||||| || | ||||||| | ||| || Sbjct 185487 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTA 185546 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||||| || || |||||||| || || || || Sbjct 185547 CAACATTCAGAAGGAGTCCACTTTGCACTTGGT 185579 >seq3 Length=22052390 Score = 102 bits (112), Expect = 6e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 23600 AATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAG 23659 |||||| ||||||||||| ||||||||||| | |||||||| || ||||| | || | Sbjct 1974935 AATTACC-AAAATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCTTGGAGG 1974993 Query 23660 TTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTAC 23719 |||| | | || || |||| | | || || ||| || || || || | | Sbjct 1974994 TTGAGCCTTCCGATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAGGGAATTC 1975053 Query 23720 CGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAG 23779 | |||||||| |||||| | || || |||||||| ||||||||||| | ||||| || Sbjct 1975054 CACCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGCCGCACCTTGT 1975113 Query 23780 GCGATTACAACATACAAAAAGAGTCCAC 23807 || ||||| || || || ||||| || Sbjct 1975114 CTGACTACAATATCCAGAAGGAGTCGAC 1975141 Score = 96.9 bits (106), Expect = 2e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| |||||| | || |||||||| |||||| | || || |||||||| ||||||||| Sbjct 1975326 GACAAGGAAGGTATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAA 1975385 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 || | ||||| | |||||||||||| ||||| ||||| || | ||||| || Sbjct 1975386 GATGGTCGCACCCTGTCCGATTACAACATTCAAAAGGAGTCTACCCTTCATTTGGT 1975441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337996508254424