Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq2 140 2e-28
seq3 102 6e-17
>seq2
Length=27840087
Score = 140 bits (154), Expect = 2e-28
Identities = 159/211 (75%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| || ||||||||||| ||||| || || |||||||| || || || | |
Sbjct 14207673 AATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACCGTC 14207614
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
||| || | || ||| | ||| | || | | ||||||||||| | || |||||||
Sbjct 14207613 GGATACCATCGAGAATGTCAAAGCCAAGA-TCCAGGACAAAGAAGGAATTCCTCCAGATC 14207555
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| |||||| |||| ||||| ||||| ||| ||||||| | |||||| | ||| ||||
Sbjct 14207554 AGCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTACA 14207495
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819
|||| ||||||||||| || || || || ||
Sbjct 14207494 ACATCCAAAAAGAGTCAACCTTGCACTTGGT 14207464
Score = 116 bits (128), Expect = 3e-21
Identities = 155/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|||||||| || ||||||||||| ||||| || || || || ||| | || || || ||
Sbjct 185368 AAAATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATTACTTTGGAGGTCGAGCCC 185427
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| | || ||| | || | || || |||||||| || | || |||||
Sbjct 185428 TCTGACACCATCGAGAATGTCAAGGC-CAAGATCCAAGACAAAGAGGGAATCCCACCAGA 185486
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||| |||||| | || || |||||||| || ||||| || | ||||||| | ||| ||
Sbjct 185487 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTA 185546
Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819
|||||| || || |||||||| || || || ||
Sbjct 185547 CAACATTCAGAAGGAGTCCACTTTGCACTTGGT 185579
>seq3
Length=22052390
Score = 102 bits (112), Expect = 6e-17
Identities = 148/208 (71%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 23600 AATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAG 23659
|||||| ||||||||||| ||||||||||| | |||||||| || ||||| | || |
Sbjct 1974935 AATTACC-AAAATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCTTGGAGG 1974993
Query 23660 TTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTAC 23719
|||| | | || || |||| | | || || ||| || || || || | |
Sbjct 1974994 TTGAGCCTTCCGATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAGGGAATTC 1975053
Query 23720 CGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAG 23779
| |||||||| |||||| | || || |||||||| ||||||||||| | ||||| ||
Sbjct 1975054 CACCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGCCGCACCTTGT 1975113
Query 23780 GCGATTACAACATACAAAAAGAGTCCAC 23807
|| ||||| || || || ||||| ||
Sbjct 1975114 CTGACTACAATATCCAGAAGGAGTCGAC 1975141
Score = 96.9 bits (106), Expect = 2e-15
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763
||||| |||||| | || |||||||| |||||| | || || |||||||| |||||||||
Sbjct 1975326 GACAAGGAAGGTATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAA 1975385
Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819
|| | ||||| | |||||||||||| ||||| ||||| || | ||||| ||
Sbjct 1975386 GATGGTCGCACCCTGTCCGATTACAACATTCAAAAGGAGTCTACCCTTCATTTGGT 1975441
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337996508254424
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |