Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq2 111 1e-19
seq1 86.0 5e-12
>seq2
Length=27840087
Score = 111 bits (122), Expect = 1e-19
Identities = 374/573 (65%), Gaps = 12/573 (2%)
Strand=Plus/Plus
Query 27163 TAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 27222
||||||||||| || ||||| || |||||||| || || |||| || || || || ||
Sbjct 14040436 TAGACGTGAGCATCGCCCAGTGTATGGACAAAATCGCCGGGTTTTAAGCCCGTCACATGG 14040495
Query 27223 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 27282
|| |||||||| || | | | || ||||||||| || || || || || ||||||
Sbjct 14040496 GCGATCATGTAGGTCAACAAGGCATACGAGGCGATGTTGAAAGGCACTCCCAGACCCATG 14040555
Query 27283 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCA-TCG-CT----TACGTAAAAC 27336
|| | | ||| || || || || || | || ||| || || ||| || |||
Sbjct 14040556 TCGGCGCTGCGCTGATACAGTTGGCAGGACAATTCACCACGCGACTGCGATACATAGAAC 14040615
Query 27337 TGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCG 27396
|| | | ||||||||| || | ||||| || | ||| || |||||||||
Sbjct 14040616 TGCGCCAGGCAGTGGCACGGCGGCAACGCCATTTGGGGTATGTCCAAAGGATTCCAGGCG 14040675
Query 27397 CACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGC 27456
||| |||||||| | || | || ||||| | || || | | | | || ||||
Sbjct 14040676 GACATTATGATGCGACGATCCGCCGGATTGTTGCGTATAGTATCGATGACCTGTTTCAGC 14040735
Query 27457 TGATCCACCCCCATCCCCGAGTAGTCTACCCT-CATGTCCGTGTACTCTGCTCCGAAATG 27515
||||| | ||| || | |||||| | | ||| | | || | ||| || || ||
Sbjct 14040736 TGATCAATACCCTGGCCGGTGTAGTCGTCGGTGCATTTAC-CATATTTTGCGCCAAAGTG 14040794
Query 27516 CCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCT 27575
| ||| ||||| || || ||||| ||||| || ||| | || | | | | ||| |
Sbjct 14040795 ACGCCACTGGAAGCCATATACCGGACCCAGATCACCCACCTCGCGATCCGTGTGGCCACA 14040854
Query 27576 CTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC--GGAG 27633
||||| | ||| || | || | || | ||||| || | ||| |||||| | ||
Sbjct 14040855 TTTGTCGAGAAACTCGCGGGTGCTATTACCATCCCATATGTGTACATTCTTCTCCTGCAG 14040914
Query 27634 AGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTC 27693
| |||||| | | ||| ||| | |||||| | ||||||||| | ||| ||
Sbjct 14040915 -GATCTTTGCA-TCTGTCTGCCCAGCAATGAACCAGATCAGCTCCTCGGCCACGCCCCGA 14040972
Query 27694 CAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 27726
| ||||| | |||||| || || | ||| |||
Sbjct 14040973 AAGAAGACGCGCTTGGTGGTCAGCAAGGGGAAC 14041005
>seq1
Length=29979347
Score = 86.0 bits (94), Expect = 5e-12
Identities = 112/149 (75%), Gaps = 6/149 (4%)
Strand=Plus/Minus
Query 48541 CCAGAGATGGGTGACAAGTTTGCGTC-CTTCACGGCGCAAAAGGGGACATGTGG-AGCC- 48597
||| |||| || |||||||| || || | |||||| ||| ||||| |||||||| | ||
Sbjct 11908518 CCACAGATTGGCGACAAGTTCGCCTCTCGTCACGG-GCAGAAGGGAACATGTGGCATCCA 11908460
Query 48598 GTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATC 48657
|| ||| ||||||||||||| ||| | || || ||| ||| || | ||||||
Sbjct 11908459 GTATCGAC--AGGAGGACATGCCGTTCACCTGCGAGGGATTGGCGCCAGATATTATCATC 11908402
Query 48658 AACCCCCACGCCTTTCCCTCCAGGATGAC 48686
|| ||||||||| ||||||| | |||||
Sbjct 11908401 AATCCCCACGCCATTCCCTCTCGTATGAC 11908373
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369492888293318
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |