Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq2 111 1e-19 seq1 86.0 5e-12 >seq2 Length=27840087 Score = 111 bits (122), Expect = 1e-19 Identities = 374/573 (65%), Gaps = 12/573 (2%) Strand=Plus/Plus Query 27163 TAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 27222 ||||||||||| || ||||| || |||||||| || || |||| || || || || || Sbjct 14040436 TAGACGTGAGCATCGCCCAGTGTATGGACAAAATCGCCGGGTTTTAAGCCCGTCACATGG 14040495 Query 27223 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 27282 || |||||||| || | | | || ||||||||| || || || || || |||||| Sbjct 14040496 GCGATCATGTAGGTCAACAAGGCATACGAGGCGATGTTGAAAGGCACTCCCAGACCCATG 14040555 Query 27283 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCA-TCG-CT----TACGTAAAAC 27336 || | | ||| || || || || || | || ||| || || ||| || ||| Sbjct 14040556 TCGGCGCTGCGCTGATACAGTTGGCAGGACAATTCACCACGCGACTGCGATACATAGAAC 14040615 Query 27337 TGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCG 27396 || | | ||||||||| || | ||||| || | ||| || ||||||||| Sbjct 14040616 TGCGCCAGGCAGTGGCACGGCGGCAACGCCATTTGGGGTATGTCCAAAGGATTCCAGGCG 14040675 Query 27397 CACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGC 27456 ||| |||||||| | || | || ||||| | || || | | | | || |||| Sbjct 14040676 GACATTATGATGCGACGATCCGCCGGATTGTTGCGTATAGTATCGATGACCTGTTTCAGC 14040735 Query 27457 TGATCCACCCCCATCCCCGAGTAGTCTACCCT-CATGTCCGTGTACTCTGCTCCGAAATG 27515 ||||| | ||| || | |||||| | | ||| | | || | ||| || || || Sbjct 14040736 TGATCAATACCCTGGCCGGTGTAGTCGTCGGTGCATTTAC-CATATTTTGCGCCAAAGTG 14040794 Query 27516 CCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCT 27575 | ||| ||||| || || ||||| ||||| || ||| | || | | | | ||| | Sbjct 14040795 ACGCCACTGGAAGCCATATACCGGACCCAGATCACCCACCTCGCGATCCGTGTGGCCACA 14040854 Query 27576 CTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC--GGAG 27633 ||||| | ||| || | || | || | ||||| || | ||| |||||| | || Sbjct 14040855 TTTGTCGAGAAACTCGCGGGTGCTATTACCATCCCATATGTGTACATTCTTCTCCTGCAG 14040914 Query 27634 AGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTC 27693 | |||||| | | ||| ||| | |||||| | ||||||||| | ||| || Sbjct 14040915 -GATCTTTGCA-TCTGTCTGCCCAGCAATGAACCAGATCAGCTCCTCGGCCACGCCCCGA 14040972 Query 27694 CAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 27726 | ||||| | |||||| || || | ||| ||| Sbjct 14040973 AAGAAGACGCGCTTGGTGGTCAGCAAGGGGAAC 14041005 >seq1 Length=29979347 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/149 (75%), Gaps = 6/149 (4%) Strand=Plus/Minus Query 48541 CCAGAGATGGGTGACAAGTTTGCGTC-CTTCACGGCGCAAAAGGGGACATGTGG-AGCC- 48597 ||| |||| || |||||||| || || | |||||| ||| ||||| |||||||| | || Sbjct 11908518 CCACAGATTGGCGACAAGTTCGCCTCTCGTCACGG-GCAGAAGGGAACATGTGGCATCCA 11908460 Query 48598 GTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATC 48657 || ||| ||||||||||||| ||| | || || ||| ||| || | |||||| Sbjct 11908459 GTATCGAC--AGGAGGACATGCCGTTCACCTGCGAGGGATTGGCGCCAGATATTATCATC 11908402 Query 48658 AACCCCCACGCCTTTCCCTCCAGGATGAC 48686 || ||||||||| ||||||| | ||||| Sbjct 11908401 AATCCCCACGCCATTCCCTCTCGTATGAC 11908373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369492888293318