Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2 690 0.0 seq4 233 3e-56 >seq2 Length=27840087 Score = 690 bits (764), Expect = 0.0 Identities = 1275/1851 (69%), Gaps = 28/1851 (2%) Strand=Plus/Minus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || |||||||| || ||||| ||||| || || || |||||| ||||| || ||| Sbjct 27785281 GCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGACCCGCTTTCCATGAATAAAAA 27785222 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 || || || | ||| |||| | || || |||| ||||||||| | ||||||||| Sbjct 27785221 TGGATTGACGTTAATTTTCCATAATTGGGTTCAGCTACATGAATATTGAAAGACTGACTT 27785162 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGA--GGAATTT 76980 ||||| || || ||||||||||||||||||||||||||| | | ||||| | ||||| Sbjct 27785161 TGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTATAGTTGA--TTTGACTGAAATTT 27785104 Query 76981 CCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAG-GTTTG--TATTTTGAATGG 77037 |||| | |||||| | | | || || | |||| | || ||||||| || | Sbjct 27785103 CCCACACAGTTTTATACAAATCACGAATTTCTTTAGGAATAGATTCAATATTTTGTATTG 27785044 Query 77038 AACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTA 77097 |||||| | |||||| ||| ||| || || || |||| |||||| | || |||| Sbjct 27785043 AACCACGACTTGATATTATTTGATTTTTCATCTCGTCATCCCACAAATCAAGTTCAGTTA 27784984 Query 77098 AAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGT 77157 || | | || | || | || |||| |||||||| |||||||| |||| | |||| Sbjct 27784983 AATCACGTAGTAAGTGGTGGTTCACTACCTGAAATTCGCCAGACAAAACTCGTCTTGTGT 27784924 Query 77158 AAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAG 77217 |||| || ||||| || || | || ||||| || ||||| ||||| ||||| || | Sbjct 27784923 AAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCCCAATATTTGCGCAGTGGATG 27784864 Query 77218 CAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTT-ATCT 77276 | || ||||| || || | | |||| |||||||| ||| ||||| | | | || | Sbjct 27784863 CTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACC--GTGTTGCGCTATAGATTT 27784806 Query 77277 TTTA-GATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAG 77335 |||| || ||||||||||||||||||| ||| | ||| | ||| || || | Sbjct 27784805 TTTAAGAGCATTCCAATCCCAAAGATCTGTTGGTGATTTTTTCCACATATCATACTGCAA 27784746 Query 77336 AATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAG 77395 |||||| || || | ||| ||| || ||||| ||||| ||| | | ||||| Sbjct 27784745 AATTCCTTTGCTTACTGGACTGCCAACATAAGTCTCATATGGTCCATCTCTCTGAGCTAA 27784686 Query 77396 TTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATC 77455 |||||| || |||||||| ||||| || || || ||||||||||||| || ||| | Sbjct 27784685 TTCACAGCTGGCTTCCAAAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAATAA 27784626 Query 77456 TTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTG 77515 ||||||| ||| || | | ||| | | | || || || || || || || || Sbjct 27784625 AAATGCTTCACGACTTTCGTAGGAATACCGCATTAATATTAATGCGTCCGCAAACCCTTG 27784566 Query 77516 AACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATA 77575 ||||||||||||||||| | || | ||| || ||||||||||||| | ||| || Sbjct 27784565 GACTCCAATACCAATAGGACGGTGACGTAAATTTGATTTTTTAGCTTCTGGCAAAGGGTA 27784506 Query 77576 ATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAG 77635 ||||| || || || |||||||| | ||| | ||| | |||| || || || || Sbjct 27784505 GTAATTTATATCAATTATTTTATTTAAGTTTTTCGTAACGATTTTAGTTACTTCTTTAAG 27784446 Query 77636 TTTAAGAAAATCA-AATCTTCCATCTA--TAACAAACATGTTCAAAGCTATAGATGCTAG 77692 || ||| ||| || || | || | |||||||| || | || ||||| || | Sbjct 27784445 CTTTTTAAAGTCATAAGATTTCTCCTGCGTCACAAACATATTAAGTGCGATAGACGCCAA 27784386 Query 77693 ATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACT 77752 |||||| || |||| |||| | | ||||| | ||| || || || |||||||| Sbjct 27784385 ATTACACACAGCTATTTCATCTGGTGCCGAATATTCAACTATTTCTGTGCACAGATTACT 27784326 Query 77753 ACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAG 77812 ||||| ||||| || | ||||||||||||||| ||| | || || ||||||||| | | Sbjct 27784325 GCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAGTCCTTAAATAA 27784266 Query 77813 AATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGC 77872 || | ||||| || || || | || ||||| || || | ||| | | ||| Sbjct 27784265 CATGTAAGGAGTACCAGTCTCTACTTGAGATTCAATGATGGCAAACCAAAGAGATTGAGC 27784206 Query 77873 TTTTATCA-TAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATT 77931 || || | | |||| | ||| | ||||| |||||||| |||| || |||||| | Sbjct 27784205 CTTAATAACTCGATTCGC-TCGTCCCTCTCGTTCATATTTGATATAGAGGTTTTCAAAAT 27784147 Query 77932 CATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCAC 77991 | || ||||||||||| | |||||||||| || ||| ||||| ||||||||||| Sbjct 27784146 CTTCACCCCAAACATCTGGGAGGCCAGGGCATTTATGTGGACACATTAATGACCAGTCTT 27784087 Query 77992 CATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTC 78051 ||| | | ||| ||||||||||| |||||||||||||| | |||| ||| ||||| | Sbjct 27784086 CATTAGCTTCAACACGTTTCATAAAAAGATCAGGTATCCACAATGCAAAAAAAAGATCGC 27784027 Query 78052 GGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAG 78111 | | | ||| || || ||||| ||||| |||||||| || | ||| || | | ||| | Sbjct 27784026 GTGCACGATGCTCCTCCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGAAGACATCTG 27783967 Query 78112 AATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTA 78171 | ||||| || || | |||||| || | ||||||||| |||| ||| |||||||| | Sbjct 27783966 AGTGCCAAGGCTCCAAATATATAGCAAATGCTCCAGGTCTTTTACCACCGCCCTGATCAA 27783907 Query 78172 TATATCTGGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCGTTAGATGTTCCA 78230 ||| | ||| |||||| | ||||| |||||||| | |||| || || || || || Sbjct 27783906 CATAACGCGCGACATTATTAAATACTCTTAACATTGGTACTAAT-CCATTTGAAGTGCCG 27783848 Query 78231 TTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT----CCCTAT 78286 || |||||| |||| | | || | || |||||| | || | || || || Sbjct 27783847 TTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAATA----CAGTGAACATTAAGTCCAAT 27783792 Query 78287 TCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTAT 78346 || |||||| ||| ||||| | ||||| ||| | || | | || || || || Sbjct 27783791 GCCACCTGCCGACTTTGATATCATTGCGCATTGTTCAACTGATTTAAAAATCCCTTCAAT 27783732 Query 78347 ACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTG 78405 ||| || || ||||| ||||||||| ||||| ||| || || || ||| Sbjct 27783731 TGAATCAGACACTATAGTTAA-AAGAAAACATGAAGACAATTGTGGACGATTTGTGGCTG 27783673 Query 78406 CATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTT 78465 || ||| | || || |||||||| ||||| | ||||| || | |||||| |||| Sbjct 27783672 CAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGATAGCAAATTGTAGGTTT 27783613 Query 78466 CAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCT 78525 ||| || || || || || ||| || |||| || |||||||| | || ||||| Sbjct 27783612 CAACTGCAGAATCAATATCTTCGCCATGTATACCTATGGCGACACGCATTAGCAAATGCT 27783553 Query 78526 GAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAA 78585 | |||||||| | | || ||||||||| | ||| || || || | || || | Sbjct 27783552 GTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAATACGACCGCTCAAGTGTCTTGA 27783493 Query 78586 AACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTA 78636 | ||||| ||||| ||| || || | || || |||||| |||| |||| Sbjct 27783492 ATCCAAAGTAGTTATATCCGAAATCGCGATCATATATAATAGCAGAGTTTA 27783442 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 78746 AAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGC 78805 ||||| |||||| ||||| || || ||||| || || || |||||||| || |||| ||| Sbjct 27782619 AAATACTTTTTTAGTTTCTTTATGAAGATTGGAAACTGCGATTCTTGCCGCCAGAAGAGC 27782560 Query 78806 ATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTC 78865 ||| || | ||| || || || || ||||||| ||||| || || || |||| || || Sbjct 27782559 ATAGTCCGCATGATGGGTTGTTAAACTGGCTGCAATTTCCGCGGCCAAGTTATCCAATTC 27782500 Query 78866 TATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGG 78909 | || | || || || ||||| | ||||||||||| || Sbjct 27782499 TTGTGTAGACACACCGCAGTAGAGTCCATTAATAACTTTCAGGG 27782456 >seq4 Length=23952536 Score = 233 bits (258), Expect = 3e-56 Identities = 564/844 (67%), Gaps = 25/844 (3%) Strand=Plus/Plus Query 47841 ACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 47900 || ||||| ||||||||| || || ||||||||| || ||||| ||||| |||| Sbjct 3358153 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3358212 Query 47901 GATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAAT 47960 || || | |||||||| |||||||| | ||| || ||||| || || | | Sbjct 3358213 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3358272 Query 47961 TCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATT 48020 || | ||| | ||| ||||| ||||| ||||| ||||| | |||||||||| Sbjct 3358273 TCCACCAACAGACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATG 3358332 Query 48021 CCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCC 48080 || || | ||| || || ||||| || || ||||||||||| || || || |||||||| Sbjct 3358333 CCAATCAATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCA 3358392 Query 48081 ACTATTATCGATGTTACCGTTTC-CTCAC---TTGGTGGATACAACAAATGTTTAAACAT 48136 || ||| | | | | | ||||| | || | | || |||||| ||||| Sbjct 3358393 GAGATGATC----TCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACAT 3358448 Query 48137 TAA-ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATG 48195 | ||| ||||| |||||||| | || || || | || || || || || || | Sbjct 3358449 CATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGG 3358507 Query 48196 TGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAA 48254 | ||||||||||| || |||||||| || |||||||| || | || |||| | ||| | Sbjct 3358508 TCAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGC-AAAGCTGCCACTA 3358566 Query 48255 AAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC----TTC 48310 ||||| || || || ||||| || || || | | |||||| || | | || ||| Sbjct 3358567 AAGAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTC 3358626 Query 48311 GTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTAT 48370 | || ||||| | |||||||| ||||| ||| ||| ||||||||||| || Sbjct 3358627 GATGAA-ATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAAT 3358685 Query 48371 AGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACT 48430 ||||| || ||| | | ||| | ||| ||| || ||||| || | | || Sbjct 3358686 GGCATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCT 3358745 Query 48431 ATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTC 48490 ||||| || ||||| | ||| || || || || ||||| || || ||||| | ||||| Sbjct 3358746 GTACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTC 3358805 Query 48491 TGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACT 48550 || || || |||||| | || || || | | ||||||||| || || ||||| Sbjct 3358806 GGTTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGA 3358865 Query 48551 AGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTA-- 48608 || ||||| || || | ||||| ||||| | ||||| |||||| | Sbjct 3358866 GGCGGCAAAGAAGGCGAGCACATGGGAGATAAAGTGACGCTCGTT----ATCAGTTAAAC 3358921 Query 48609 --TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCT 48666 |||||| | | ||||| || | ||| || ||||| | ||||| ||||| |||| Sbjct 3358922 GTGCCCAGTCGGTCAAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCAGAATGAGGCCT 3358981 Query 48667 CTGC 48670 | || Sbjct 3358982 CAGC 3358985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694641204281920