Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq2 690 0.0
seq4 233 3e-56
>seq2
Length=27840087
Score = 690 bits (764), Expect = 0.0
Identities = 1275/1851 (69%), Gaps = 28/1851 (2%)
Strand=Plus/Minus
Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862
|| |||||||| || ||||| ||||| || || || |||||| ||||| || |||
Sbjct 27785281 GCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGACCCGCTTTCCATGAATAAAAA 27785222
Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922
|| || || | ||| |||| | || || |||| ||||||||| | |||||||||
Sbjct 27785221 TGGATTGACGTTAATTTTCCATAATTGGGTTCAGCTACATGAATATTGAAAGACTGACTT 27785162
Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGA--GGAATTT 76980
||||| || || ||||||||||||||||||||||||||| | | ||||| | |||||
Sbjct 27785161 TGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTATAGTTGA--TTTGACTGAAATTT 27785104
Query 76981 CCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAG-GTTTG--TATTTTGAATGG 77037
|||| | |||||| | | | || || | |||| | || ||||||| || |
Sbjct 27785103 CCCACACAGTTTTATACAAATCACGAATTTCTTTAGGAATAGATTCAATATTTTGTATTG 27785044
Query 77038 AACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTA 77097
|||||| | |||||| ||| ||| || || || |||| |||||| | || ||||
Sbjct 27785043 AACCACGACTTGATATTATTTGATTTTTCATCTCGTCATCCCACAAATCAAGTTCAGTTA 27784984
Query 77098 AAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGT 77157
|| | | || | || | || |||| |||||||| |||||||| |||| | ||||
Sbjct 27784983 AATCACGTAGTAAGTGGTGGTTCACTACCTGAAATTCGCCAGACAAAACTCGTCTTGTGT 27784924
Query 77158 AAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAG 77217
|||| || ||||| || || | || ||||| || ||||| ||||| ||||| || |
Sbjct 27784923 AAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCCCAATATTTGCGCAGTGGATG 27784864
Query 77218 CAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTT-ATCT 77276
| || ||||| || || | | |||| |||||||| ||| ||||| | | | || |
Sbjct 27784863 CTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACC--GTGTTGCGCTATAGATTT 27784806
Query 77277 TTTA-GATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAG 77335
|||| || ||||||||||||||||||| ||| | ||| | ||| || || |
Sbjct 27784805 TTTAAGAGCATTCCAATCCCAAAGATCTGTTGGTGATTTTTTCCACATATCATACTGCAA 27784746
Query 77336 AATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAG 77395
|||||| || || | ||| ||| || ||||| ||||| ||| | | |||||
Sbjct 27784745 AATTCCTTTGCTTACTGGACTGCCAACATAAGTCTCATATGGTCCATCTCTCTGAGCTAA 27784686
Query 77396 TTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATC 77455
|||||| || |||||||| ||||| || || || ||||||||||||| || ||| |
Sbjct 27784685 TTCACAGCTGGCTTCCAAAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAATAA 27784626
Query 77456 TTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTG 77515
||||||| ||| || | | ||| | | | || || || || || || || ||
Sbjct 27784625 AAATGCTTCACGACTTTCGTAGGAATACCGCATTAATATTAATGCGTCCGCAAACCCTTG 27784566
Query 77516 AACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATA 77575
||||||||||||||||| | || | ||| || ||||||||||||| | ||| ||
Sbjct 27784565 GACTCCAATACCAATAGGACGGTGACGTAAATTTGATTTTTTAGCTTCTGGCAAAGGGTA 27784506
Query 77576 ATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAG 77635
||||| || || || |||||||| | ||| | ||| | |||| || || || ||
Sbjct 27784505 GTAATTTATATCAATTATTTTATTTAAGTTTTTCGTAACGATTTTAGTTACTTCTTTAAG 27784446
Query 77636 TTTAAGAAAATCA-AATCTTCCATCTA--TAACAAACATGTTCAAAGCTATAGATGCTAG 77692
|| ||| ||| || || | || | |||||||| || | || ||||| || |
Sbjct 27784445 CTTTTTAAAGTCATAAGATTTCTCCTGCGTCACAAACATATTAAGTGCGATAGACGCCAA 27784386
Query 77693 ATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACT 77752
|||||| || |||| |||| | | ||||| | ||| || || || ||||||||
Sbjct 27784385 ATTACACACAGCTATTTCATCTGGTGCCGAATATTCAACTATTTCTGTGCACAGATTACT 27784326
Query 77753 ACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAG 77812
||||| ||||| || | ||||||||||||||| ||| | || || ||||||||| | |
Sbjct 27784325 GCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAGTCCTTAAATAA 27784266
Query 77813 AATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGC 77872
|| | ||||| || || || | || ||||| || || | ||| | | |||
Sbjct 27784265 CATGTAAGGAGTACCAGTCTCTACTTGAGATTCAATGATGGCAAACCAAAGAGATTGAGC 27784206
Query 77873 TTTTATCA-TAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATT 77931
|| || | | |||| | ||| | ||||| |||||||| |||| || |||||| |
Sbjct 27784205 CTTAATAACTCGATTCGC-TCGTCCCTCTCGTTCATATTTGATATAGAGGTTTTCAAAAT 27784147
Query 77932 CATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCAC 77991
| || ||||||||||| | |||||||||| || ||| ||||| |||||||||||
Sbjct 27784146 CTTCACCCCAAACATCTGGGAGGCCAGGGCATTTATGTGGACACATTAATGACCAGTCTT 27784087
Query 77992 CATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTC 78051
||| | | ||| ||||||||||| |||||||||||||| | |||| ||| ||||| |
Sbjct 27784086 CATTAGCTTCAACACGTTTCATAAAAAGATCAGGTATCCACAATGCAAAAAAAAGATCGC 27784027
Query 78052 GGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAG 78111
| | | ||| || || ||||| ||||| |||||||| || | ||| || | | ||| |
Sbjct 27784026 GTGCACGATGCTCCTCCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGAAGACATCTG 27783967
Query 78112 AATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTA 78171
| ||||| || || | |||||| || | ||||||||| |||| ||| |||||||| |
Sbjct 27783966 AGTGCCAAGGCTCCAAATATATAGCAAATGCTCCAGGTCTTTTACCACCGCCCTGATCAA 27783907
Query 78172 TATATCTGGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCGTTAGATGTTCCA 78230
||| | ||| |||||| | ||||| |||||||| | |||| || || || || ||
Sbjct 27783906 CATAACGCGCGACATTATTAAATACTCTTAACATTGGTACTAAT-CCATTTGAAGTGCCG 27783848
Query 78231 TTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT----CCCTAT 78286
|| |||||| |||| | | || | || |||||| | || | || || ||
Sbjct 27783847 TTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAATA----CAGTGAACATTAAGTCCAAT 27783792
Query 78287 TCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTAT 78346
|| |||||| ||| ||||| | ||||| ||| | || | | || || || ||
Sbjct 27783791 GCCACCTGCCGACTTTGATATCATTGCGCATTGTTCAACTGATTTAAAAATCCCTTCAAT 27783732
Query 78347 ACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTG 78405
||| || || ||||| ||||||||| ||||| ||| || || || |||
Sbjct 27783731 TGAATCAGACACTATAGTTAA-AAGAAAACATGAAGACAATTGTGGACGATTTGTGGCTG 27783673
Query 78406 CATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTT 78465
|| ||| | || || |||||||| ||||| | ||||| || | |||||| ||||
Sbjct 27783672 CAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGATAGCAAATTGTAGGTTT 27783613
Query 78466 CAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCT 78525
||| || || || || || ||| || |||| || |||||||| | || |||||
Sbjct 27783612 CAACTGCAGAATCAATATCTTCGCCATGTATACCTATGGCGACACGCATTAGCAAATGCT 27783553
Query 78526 GAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAA 78585
| |||||||| | | || ||||||||| | ||| || || || | || || |
Sbjct 27783552 GTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAATACGACCGCTCAAGTGTCTTGA 27783493
Query 78586 AACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTA 78636
| ||||| ||||| ||| || || | || || |||||| |||| ||||
Sbjct 27783492 ATCCAAAGTAGTTATATCCGAAATCGCGATCATATATAATAGCAGAGTTTA 27783442
Score = 98.7 bits (108), Expect = 1e-15
Identities = 120/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 78746 AAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGC 78805
||||| |||||| ||||| || || ||||| || || || |||||||| || |||| |||
Sbjct 27782619 AAATACTTTTTTAGTTTCTTTATGAAGATTGGAAACTGCGATTCTTGCCGCCAGAAGAGC 27782560
Query 78806 ATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTC 78865
||| || | ||| || || || || ||||||| ||||| || || || |||| || ||
Sbjct 27782559 ATAGTCCGCATGATGGGTTGTTAAACTGGCTGCAATTTCCGCGGCCAAGTTATCCAATTC 27782500
Query 78866 TATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGG 78909
| || | || || || ||||| | ||||||||||| ||
Sbjct 27782499 TTGTGTAGACACACCGCAGTAGAGTCCATTAATAACTTTCAGGG 27782456
>seq4
Length=23952536
Score = 233 bits (258), Expect = 3e-56
Identities = 564/844 (67%), Gaps = 25/844 (3%)
Strand=Plus/Plus
Query 47841 ACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 47900
|| ||||| ||||||||| || || ||||||||| || ||||| ||||| ||||
Sbjct 3358153 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3358212
Query 47901 GATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAAT 47960
|| || | |||||||| |||||||| | ||| || ||||| || || | |
Sbjct 3358213 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3358272
Query 47961 TCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATT 48020
|| | ||| | ||| ||||| ||||| ||||| ||||| | ||||||||||
Sbjct 3358273 TCCACCAACAGACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATG 3358332
Query 48021 CCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCC 48080
|| || | ||| || || ||||| || || ||||||||||| || || || ||||||||
Sbjct 3358333 CCAATCAATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCA 3358392
Query 48081 ACTATTATCGATGTTACCGTTTC-CTCAC---TTGGTGGATACAACAAATGTTTAAACAT 48136
|| ||| | | | | | ||||| | || | | || |||||| |||||
Sbjct 3358393 GAGATGATC----TCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACAT 3358448
Query 48137 TAA-ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATG 48195
| ||| ||||| |||||||| | || || || | || || || || || || |
Sbjct 3358449 CATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGG 3358507
Query 48196 TGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAA 48254
| ||||||||||| || |||||||| || |||||||| || | || |||| | ||| |
Sbjct 3358508 TCAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGC-AAAGCTGCCACTA 3358566
Query 48255 AAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC----TTC 48310
||||| || || || ||||| || || || | | |||||| || | | || |||
Sbjct 3358567 AAGAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTC 3358626
Query 48311 GTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTAT 48370
| || ||||| | |||||||| ||||| ||| ||| ||||||||||| ||
Sbjct 3358627 GATGAA-ATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAAT 3358685
Query 48371 AGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACT 48430
||||| || ||| | | ||| | ||| ||| || ||||| || | | ||
Sbjct 3358686 GGCATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCT 3358745
Query 48431 ATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTC 48490
||||| || ||||| | ||| || || || || ||||| || || ||||| | |||||
Sbjct 3358746 GTACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTC 3358805
Query 48491 TGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACT 48550
|| || || |||||| | || || || | | ||||||||| || || |||||
Sbjct 3358806 GGTTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGA 3358865
Query 48551 AGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTA-- 48608
|| ||||| || || | ||||| ||||| | ||||| |||||| |
Sbjct 3358866 GGCGGCAAAGAAGGCGAGCACATGGGAGATAAAGTGACGCTCGTT----ATCAGTTAAAC 3358921
Query 48609 --TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCT 48666
|||||| | | ||||| || | ||| || ||||| | ||||| ||||| ||||
Sbjct 3358922 GTGCCCAGTCGGTCAAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCAGAATGAGGCCT 3358981
Query 48667 CTGC 48670
| ||
Sbjct 3358982 CAGC 3358985
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694641204281920
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